Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq124 104 2e-17 seq60 104 2e-17 >seq124 Length=28153 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || || |||| ||| |||||||||||| ||||| || |||| ||| | | || Sbjct 11552 AAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCTGATAATGTTCTACCATCT 11611 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || || || |||||||| | || ||||||||| | |||| || |||||||| Sbjct 11612 TCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTCT 11671 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 ||| ||| || ||| | | | ||||| | ||| || || | || || ||| Sbjct 11672 TGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGTGTTATTGTT 11731 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || ||||||||||| || ||||| Sbjct 11732 TTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || || ||||| || |||||||||||| |||||||| || | ||| | || Sbjct 11324 AAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGACAATGTTCTTCCATCT 11383 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || || || |||||||| | || ||||||||| | |||| || |||||||| Sbjct 11384 TCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTCT 11443 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 || || || ||| | | | ||||| | ||| || || | || || ||| Sbjct 11444 TGTATTTTAGCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGAGTTATTGTT 11503 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || ||||||||||| || ||||| Sbjct 11504 TTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11535 >seq60 Length=41302 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| |||||||||||||| ||||||| ||| | || || | ||| || || ||||| Sbjct 6125 CTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCTAGCTGTTTTCCTGCAAA 6066 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || |||| ||||| || | |||| |||||||| || ||| ||| |||||| Sbjct 6065 AATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTGAATTTTTGCCTTTACATT 6006 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || || | || || || | |||||| ||||||||||| | ||||||||| Sbjct 6005 CTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTTTCCCGTTAGAGTTTTTAC 5946 Query 48755 AAAAATCTGCAT 48766 ||||| ||||| Sbjct 5945 GAAAATTTGCAT 5934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933175528819