Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq306 107 4e-18 seq40 87.8 4e-12 >seq306 Length=50732 Score = 107 bits (118), Expect = 4e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 133942 TGCATGGAATGTTGGTGAACTAGATAAAATGACTTTGCCACCATGTCATTGCTTTAGTCA 134001 ||||||||||||| || || ||| ||||| | | || || |||||| || | || Sbjct 47558 TGCATGGAATGTTAAAGATCTTGATCAAATGGCACTACCTCCTTGTCATATTTTATGCCA 47499 Query 134002 ATTCTTCGTAAATGACGGTAAGTTATCATGTATTCTATATCAACGTAGCTGTGATCTATT 134061 ||| | || ||| || || |||||||||||| | |||||| | |||||| || Sbjct 47498 ATTTTATGTTTTTGATGGAAAATTATCATGTATTATGTATCAAAGGTCATGTGATTTAGG 47439 Query 134062 CTTAGGAGTACCATTCAACATTGCTTCATATTCATTACTAACTCATATGTTAGCACAAGT 134121 |||||||| || || || ||||| || |||||| || | ||||||||| | |||||||| Sbjct 47438 TTTAGGAGTCCCTTTTAATATTGCCTCCTATTCAATATTCACTCATATGATTGCACAAGT 47379 Query 134122 TTGT 134125 ||| Sbjct 47378 GTGT 47375 >seq40 Length=15352 Score = 87.8 bits (96), Expect = 4e-12 Identities = 226/337 (67%), Gaps = 13/337 (4%) Strand=Plus/Plus Query 150320 GATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGATTCTTTCTCGTAA 150378 ||||| | || ||||| || | |||| || || || | |||||| || | || | | Sbjct 2515 GATCCTGTCATAGGTCGAGATAATGAAATTAGAAGAGC-AATTCAAATATTGTCAAGAAG 2573 Query 150379 AACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGA 150438 ||| ||||| ||| | || | ||||| ||||||||||||||||| || ||||| Sbjct 2574 AACAAAAAATAATCCTATATTGTTAGGTGATCCAGGTGTTGGTAAAACTGCTATAGTTGA 2633 Query 150439 CGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAA- 150497 || |||| | || | | | || ||||| || |||||| |||||| | |||| Sbjct 2634 AGGTCTAGCTATAAAAATAGTTCAAGGAGATGTACCTGATTCTTTGAAAG--GAAGAAAA 2691 Query 150498 -TTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAA 150556 | ||||| | ||||| | ||| |||||| | || ||| | || || || ||| Sbjct 2692 TTAGTTTCTCTAGATATGTCATCGCTTATAGCTGGTGCAAAATATAGAGGAGATTTTGAA 2751 Query 150557 GAACGTGTAGA--CAATTTGCTACAAGAACTAAAAGAACGCGATG---ATGTTATTCTGT 150611 ||||| || | | |||| || ||||| | |||| || | | ||| || ||| Sbjct 2752 GAACGATTAAAATCCATTT--TAAAAGAAGTGCAAGATGCTGAAGGACAAGTTGTTATGT 2809 Query 150612 TCATCGATGAAATCCATACTATTATGGGTGCTGGTGC 150648 | || |||||||| |||||| || | || ||||| || Sbjct 2810 TTATTGATGAAATACATACTGTTGTAGGAGCTGGAGC 2846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147576387562594