Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_019521.1 Length=219372 Score E Sequences producing significant alignments: (Bits) Value seq183 129 8e-25 >seq183 Length=22570 Score = 129 bits (142), Expect = 8e-25 Identities = 436/674 (65%), Gaps = 10/674 (1%) Strand=Plus/Plus Query 173031 TATCAACCTGCTACCCCGACATTCTCAAACGCTGGAAAACTTAAAGGTGGTGAATTGGTA 173090 |||||||||||||| || || |||||||| || | |||| | | ||| | || || Sbjct 18576 TATCAACCTGCTACTCCTACTTTCTCAAATGCCGCAAAAAAAAGATCTGGAAAGTTAGTC 18635 Query 173091 TCATGTTTCTTAGATGAAATCGGTGATTCTAAAGTTGGAATATCCAAATCTATTCAAGCC 173150 || ||||| | |||| | ||||||| | ||| ||| | |||| || Sbjct 18636 TCTTGTTTTCTGTTAGAAACTGAAGATTCTATTAATTCAAT---CAATTATATTATTGCT 18692 Query 173151 GCATTGGATTTATCTTCGA----TGGGTGGAGGTGTATCGTTTAACGTATCTAAATTACG 173206 |||| || | ||| | | || ||||| ||| | | || | ||||| ||| | Sbjct 18693 GCATCT-ATGCAACTTAGTAAAGTTGGGGGAGGAGTAGCAGTAAATCTTTCTAAGTTAAG 18751 Query 173207 TGCACGTGGTGAAGCTATTAAAGGAATCGACGGAAGAGCTTCAGGTGTTTTACCAGTAAT 173266 | | | || | |||||||| | || | | ||||||||| || | || ||| | Sbjct 18752 AGGAAGGGGAGCGTCTATTAAAAAGGTAGATAGTACAGCTTCAGGAGTGCTTCCTGTATT 18811 Query 173267 GAAAATCCTTGAAGATGCTTTTTCATATGCTAATCAATTAGGACAACGTCCAGGTGCTGG 173326 || || |||||||||| ||| |||||| ||||||||||| || |||| ||| Sbjct 18812 AAAGATACTTGAAGATGTATTTGACTATGCTGATCAATTAGGAGTTCGAAGAGGTAGTGG 18871 Query 173327 AGCTGCTTATATCAATATCTTCCATTCAGATGTTGAAGAATTTCTAGATTCTAAGAAAAT 173386 || || ||| | || || || || | ||| | | ||| ||| | |||| ||| ||||| Sbjct 18872 TGCGGCATATTTGAACATTTTTCACTATGATTTGGTAGACTTTATCGATTGTAAAAAAAT 18931 Query 173387 CAACGCTGACGAAAAATCACGTCTTAAATCGCTTTCGTTAGGTGTTATCGTTCCTGACAA 173446 || || || ||||| ||| | || | | ||||| | || | || ||||| ||||| Sbjct 18932 TAATGCAGATGAAAAGTCAAGAATTCAGACCCTTTCTATTGGATTAATAGTTCCCGACAA 18991 Query 173447 ATTCATGGAATTAGCTGAGAAGGATGAACCATTTTATGTTTTCTATCCATATACAGTTAA 173506 || | |||||||| || | || || |||| | | || | || |||| || Sbjct 18992 GTTTTTTCAATTAGCTAAGGAAAATAAAAACTTTTTTATATTTGAACCTAATACTATTTT 19051 Query 173507 GAAAGAATACGGTAAACATCTAGATGATTTGGATATCGATACAATG-TATTCCGAATTAG 173565 ||||||| || | | | ||||| ||||| || |||| ||| | |||||| Sbjct 19052 TCAAGAATATGGAGTATTTTTGTCAGATTTAGATAT-GAATGAATGATATGACAAATTAG 19110 Query 173566 TTTCTAATCCTAATGTTAAGAAACGTAAGTTAAATGCTAGACGTATGTTAACTAAGATTG 173625 | ||||| ||| || |||| | ||| ||||||| || | || ||||| | Sbjct 19111 CTGTCAATCCAAATATTTTGAAAAAAGAATTATCTGCTAGATTAATTCTTACCAAGATAG 19170 Query 173626 CACAAGTTCAGAAAGAATCAGGTTATCCATATTTCTTCTTGAAAACTAATGCTAACGAAT 173685 | ||| |||| ||||| |||||||| || | | || | ||||||||| || Sbjct 19171 CGCAAATTCAATTTGAATCTGGTTATCCTTACGTAATATTTATTGATAATGCTAATAAAA 19230 Query 173686 ATCATCCTTTGAAG 173699 || ||||||||||| Sbjct 19231 ATAATCCTTTGAAG 19244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701854039064160