Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq124 131 1e-25 seq60 107 2e-18 >seq124 Length=28153 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||||||||| || ||||| || || || || || ||| Sbjct 11763 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACACTTGATGTTGAGCCATCA 11704 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| ||||| || ||| | || |||||| Sbjct 11703 GATACCATTGAGAATGTTAAGGCAAAAATTCAAGACAAGGAAGGAATTCCACCTGATCAA 11644 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | || ||||| || |||||||| |||||| || ||| | | || || ||| Sbjct 11643 CAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGTAGAACATTATCAGACTACAAC 11584 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||| || ||| | ||| | || ||||||||| ||||||| || Sbjct 11583 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTAAGATTAAGAGGAGGTAT 11534 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||||||||| || ||||| || || || || || ||| Sbjct 11535 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACTCTTGATGTTGAGCCATCA 11476 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||||| ||||| || ||| | || |||||| Sbjct 11475 GATACCATTGAGAATGTTAAGGCTAAAATACAAGACAAGGAAGGAATTCCACCTGATCAA 11416 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | || ||||| || |||||||| |||||| | ||| || | ||||| ||| Sbjct 11415 CAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTGTCGGATTACAAC 11356 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||||||||| || || || ||| | || ||||||||| |||| || Sbjct 11355 ATTCAAAAAGAGTCAACCCTACACTTAGTTTTAAGATTAAGAGGTGG 11309 Score = 105 bits (116), Expect = 6e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||||||| | || |||||||| |||||||| |||||| | ||| || | ||| Sbjct 11877 GATCAACAGAGATTAATATTTGCGGGAAAACAATTAGAAGATGGAAGAACATTGTCGGAT 11818 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || |||||||||||||| || ||| | ||| | || ||||||||| ||||||| || Sbjct 11817 TACAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTAAGATTAAGAGGAGGTAT 11762 >seq60 Length=41302 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 |||||||||||| || |||||||| ||||||| ||||||||||| || ||||| Sbjct 5930 AAAAATGCAAATTTTCGTAAAAACTCTAACGGGAAAAACCATTACGCTTGATGTCGAACC 5989 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | || | ||| |||||| || || |||||| | || ||| Sbjct 5990 ATCTGACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAGGGAATTCCACCAGA 6049 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||||| ||||| || ||||| || ||||| | |||||| | ||| | | || || Sbjct 6050 CCAACAAAGACTAATTTTTGCAGGAAAACAGCTAGAAGATGGAAGAACCTTATCTGACTA 6109 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 || |||||||| || |||||| ||||| ||||| || Sbjct 6110 CAATATTCAAAAGGAGTCTACTTTGCACTTGGTAATA 6146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425399859056187