Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_020081.2 Length=149844 Score E Sequences producing significant alignments: (Bits) Value seq183 98.7 1e-15 >seq183 Length=22570 Score = 98.7 bits (108), Expect = 1e-15 Identities = 244/358 (68%), Gaps = 17/358 (5%) Strand=Plus/Plus Query 58613 GTAAGCTCCGTGAATCGCTTCATCACGGATTATGAGATTTATCACCTCTCCGGAGTTCAT 58672 |||| ||| || || |||||||| | ||||| | ||| || | ||||||| ||| | Sbjct 16916 GTAAAGTCCATGTATAGCTTCATCTCTAATTATTAAATTAATTATCTCTCCGCTGTTAAC 16975 Query 58673 CAGTTTACCTTGCCCGTAGAAATATAACGGGTAGTAGAAACCACTATAGAACAAGAAGCT 58732 || | ||||| | | | |||||| | ||| | || ||| || || ||||| | Sbjct 16976 CATTAGGCCTTGAGAGGATAGATATAATAGATAGAAAAATCCAGAGTAAAA-AAGAAACG 17034 Query 58733 -TTCTAAGAAAACAGACGCAGTCATAGCCTTGAAAAGTGAGATGTCGTCGTCCTTTTGAA 58791 |||||| || || || |||||||||||| ||||||| || | | ||| | || Sbjct 17035 ATTCTAAAAATACTGAGGCAGTCATAGCCAAATAAAGTGA---TTCTT--TACTTGT-AA 17088 Query 58792 TGTTGTTATAGACATCGACAATAATTCTCGCTTTCTTTTGCAAGAACTTG-TTGTTCTTT 58850 ||| ||||||| ||| |||| ||| || ||| ||||||| | | | || | |||| Sbjct 17089 TGTCGTTATAGTATTCGGCAATCATTGTCATTTTTTTTTGCA--ATGTGGATTCTCCTTT 17146 Query 58851 -ACCCATTCAAACACTTCTTTGATTTCCTCTG-AGGAGGCAAGAGTTAGGAAGATATTAG 58908 || ||||||||||| | || ||||| |||| | | ||| || |||||| || Sbjct 17147 AACTCATTCAAACACCTGGTTTATTTCTTCTGTACTGAGTAAG-GTACAGAAGATTGAAG 17205 Query 58909 AATAAGACTTTGCATGAACTGCGTTCTCCATCATACCCATAAAGCTAAGTACGGCTTT 58966 | || |||||||| | | | |||||||| |||||||| |||||| ||||| Sbjct 17206 AGTAGCTTTTTGCATGCATT---TGTTCCATCATTCCCATAAATTGAAGTACTGCTTT 17260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479367089471520