Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq27 316 1e-81 >seq27 Length=5678 Score = 316 bits (350), Expect = 1e-81 Identities = 1040/1578 (66%), Gaps = 80/1578 (5%) Strand=Plus/Plus Query 24983 AGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCT-TAT 25041 |||||| | | ||| || || | || || |||||||||| |||||||||||| || Sbjct 855 AGATCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAA 914 Query 25042 TGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGA 25101 | | | ||| ||| | |||||||| |||| ||||| || | |||||||| ||||| Sbjct 915 TAA-ATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGA 973 Query 25102 TGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTG 25161 || |||||||| ||| | || || ||||| || ||||||| |||| || | | Sbjct 974 AGCAGTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAG 1033 Query 25162 TTTTAATTTATCCCAAT-CTA--AATTATTATCTAACTCGATATCGTTATCATATAAATC 25218 |||| || |||||||| | | | ||| |||||| || ||| || ||| || Sbjct 1034 CTTTAGTTCATCCCAATTCCAGTACTTACTATCTACCTTTTTATTC----CACATA--TC 1087 Query 25219 AAATTGTAACAATCC---ACTTGCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTTT 25275 |||||||| | || ||| |||| | |||| ||| | ||| || | Sbjct 1088 AAATTGTAGAATACCTTGACTAGCTGGACTACCCTGAT---AAGATTCATAAGGTCCATG 1144 Query 25276 TGTTATTGCCATATCTTTTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGC 25335 | ||||| | || | || ||||| |||||||| ||||| |||| || || Sbjct 1145 AATCATTGCTAATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCT 1204 Query 25336 TTTGTTTAAAAACTTAGCTTTTTCTCCATCGAAAGCAATTTC-CATTAAGGCG--AACGT 25392 | | || || ||||||| || || | || || || || || || || || Sbjct 1205 TCTATTCAACTCTTTAGCTTCATCCGACTC-ATAGGGATATCTCA--AAAGCATAAAAGT 1261 Query 25393 ATCTGCTAATCCCTGAACTCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGT 25452 ||||||||| |||||||| |||| || | || | ||| | || ||| | | | Sbjct 1262 ATCTGCTAACCCCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGC 1321 Query 25453 TTCTGATGTTGGATAGAAATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTT 25512 |||| | || || ||||| | || || | ||||||||||| | | || || Sbjct 1322 TTCTTTAATAGGGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAA--TT 1379 Query 25513 TGTGTATTTTCTCAACTCAATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTAC 25572 | |||| |||| | ||| | ||| ||| || ||| | || | || Sbjct 1380 TTTGTAATTTCATAT---AATTTTTTAAAATTAAAT----TCTTTTTTTTCCAAGTCCAC 1432 Query 25573 AAATTTAGATAAAGCGATTGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCA-GAAT 25631 |||||| ||||||| || || || | |||||| ||||| ||| | | || | | || Sbjct 1433 AAATTTGCATAAAGCAATAGAAGCAAGATTACATACAGCAACTTCAT-CAGGTGAAGTAT 1491 Query 25632 ATTCATTGATCTCGATACATAAGTTGCTAGATTTGATTACTCCATA-ATTCTTTTGATT- 25689 | ||| | || || |||||| || ||| ||||||| | | | || ||| |||||||| Sbjct 1492 ACTCAATAATTTCACAACATAAATTACTACATTTGAT-AGTACCTAGATTTTTTTGATTC 1550 Query 25690 -ATTGCATGTATTGACAATA-TCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGA 25747 ||| | ||| ||| | ||||||||| | |||||| ||||||||||||||| Sbjct 1551 GATTTA--GCATT-ACATGAGTCTTTATATAACATATATGGAACACCTGTTTCAATTTGA 1607 Query 25748 GATACTAAAATTTTCTCCCAAAGTTCTCTCGCTTTTAC--TTTCTTTACGAAGTTACCAT 25805 | ||| || ||| | ||| ||| ||| ||| ||| | |||| Sbjct 1608 CTTTGTAATATAGCAAACCATAAATCTTGTGCTAATACAGTTTTTTTGC-------CCAT 1660 Query 25806 CAGAAACAGCTCTTTCGTAAAGTTCAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTT 25865 | | ||| | | | |||| || || | | || ||| | ||| Sbjct 1661 -------ATTTTCTTCTTCATACTTAACATATAATTTTTCAAATTCTTCACCCCAT-GTT 1712 Query 25866 TGCCATATTTATTGAGAATAATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAA 25925 | | || | | | | | || ||||||| | |||| ||||| ||||| | | Sbjct 1713 TCACTTAGTCCTGGGCATTCAT--TTGGACACATTAAAGTCCAATTTTGATTTTCTTTTA 1770 Query 25926 CTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTT 25985 || | | ||| || || || |||| ||| | |||||||| |||||||| ||||| | || Sbjct 1771 CTCTTTTCATGAACAAGTCAGGAACCCAAACAGCATAAAACAAATCTCTTGCTCTTAATT 1830 Query 25986 CTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTT 26045 ||||||| || ||||| ||| ||| |||||| || || || |||||||| |||||||||| Sbjct 1831 CTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATTCGAATATATCTGAATGCCATGGTT 1890 Query 26046 CTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAG 26105 | | ||| | ||||||| |||||||||||||||||| ||||||||||| ||||| || | Sbjct 1891 CAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTCCTCCTTGATCTACATATCTAGCTG 1950 Query 26106 TTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAA 26165 | ||||| |||||| | ||||| || || | |||| |||||| ||| || || | || Sbjct 1951 TATCATTAAAAACTCTTAACATAGGTACGAGTCCATTTGAAATTCCATTCGTACCTCTAA 2010 Query 26166 TCT-TGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTT 26224 | | | || |||| ||| ||||| || | | ||| || |||||||| ||| Sbjct 2011 TATACGAATTTTGTC-CTCTTATATCTTGTACTGCTACACCTATACCACCAGCTGTTTTA 2069 Query 26225 GAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATT 26284 |||| ||||| | | | ||| ||||| || |||| ||| ||| |||||| Sbjct 2070 CTAATAAGAGCACACTGTTTTAGTGTTTCGAATATACCTTCTATTGAATCTGATTTCATA 2129 Query 26285 CCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGT 26344 ||| | ||||||||| || | ||| | || || || |||||||||||||| ||| Sbjct 2130 GATAAAAGAAAACAAGACGACATTTGGGGTCTAGGAGTACCAGAATTAAATAATGTTGGT 2189 Query 26345 GTAGCATGAGTATAATATCCTTCA---CTCAAAGCTGTATAAGTTTCAAGAACTTCATCG 26401 ||||||||||| ||||| || | ||||| || ||||||||| | ||| ||| Sbjct 2190 GTAGCATGAGTGAAATATTTTTGAGACATCAAA--TG-ATAAGTTTCTAATGCTTTATCT 2246 Query 26402 ATATTGTAATTA---CTAACT-TCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTC 26457 |||| | | || || || || ||| || | ||| | | || ||| |||| ||| Sbjct 2247 ATATCATCAATATGTATACCTATCGATA-CTCTCATTA---ATAAATGTTGTGGTCTTTC 2302 Query 26458 AATTACATTATTTTCCGCATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAA 26517 ||| ||| | || || |||| ||||||||| ||||||| || || |||||||| Sbjct 2303 AAT--AATTTTGTTGTTAATACGTAAT-AAATAAGATCTTTCTAATGTCTTAAATCCAAA 2359 Query 26518 ATAATCATGATTGAAATC 26535 |||||||| ||| ||||| Sbjct 2360 ATAATCATAATTAAAATC 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253037061019475