Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq124 192 1e-43 >seq124 Length=28153 Score = 192 bits (212), Expect = 1e-43 Identities = 184/236 (78%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||| |||| | || | || || || | |||||| ||| || Sbjct 11528 ATTTGCATACCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTG 11587 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| ||||| |||||| ||| |||||||||||||| ||||| ||||||||||||||| Sbjct 11588 TAGTCTGATAATGTTCTACCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGA 11647 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || |||||||| || ||||| ||||| | || | ||| ||| ||||| || Sbjct 11648 TCAGGTGGAATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTCTCAATGGTATCTGAT 11707 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || || ||||| ||||| ||||||| ||||||||||| |||||||| Sbjct 11708 GGCTCAACATCAAGTGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Score = 188 bits (208), Expect = 1e-42 Identities = 184/237 (78%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 |||||| | ||||||||| |||| | || | || | || | |||||| ||| || Sbjct 11299 AATTTAAAAACCACCTCTTAATCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTT 11358 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || || ||||| ||| |||||||||||||| ||||| |||||||||||||| Sbjct 11359 GTAATCCGACAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTG 11418 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || |||||||| || ||||||||||| | || | ||| ||| ||||| || Sbjct 11419 ATCAGGTGGAATTCCTTCCTTGTCTTGTATTTTAGCCTTAACATTCTCAATGGTATCTGA 11478 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || |||||||| ||||| ||||||| ||||||||||| |||||||| Sbjct 11479 TGGCTCAACATCAAGAGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11535 Score = 158 bits (174), Expect = 2e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||| |||| | || | || || || | |||||| ||| || Sbjct 11756 ATTTGCATACCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTG 11815 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || || ||||| ||| |||||||||||||| ||||| ||||||||||||||| Sbjct 11816 TAATCCGACAATGTTCTTCCATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGA 11875 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || |||||||| |||||||| ||||| | || | ||| ||||||||| || Sbjct 11876 TCAGGTGGAATTCCTTCCTTATCTTGAATTTTTGCCTTAACATTCTCAATAGTATCCGAT 11935 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCT 193334 | ||||| || |||||||||||||| ||| Sbjct 11936 GGTTCAACATCAAGAGTTATAGTTTTTCCT 11965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899643682866960