Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq392 212 9e-50 seq124 127 3e-24 >seq392 Length=30882 Score = 212 bits (234), Expect = 9e-50 Identities = 551/828 (67%), Gaps = 20/828 (2%) Strand=Plus/Minus Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAAT 17938 ||| |||| ||||| |||||||| ||||||| | ||||| |||| ||| ||| ||| Sbjct 27553 ACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGAAGAGATATCAAATCCATCCAATTAAAA 27494 Query 17939 GGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCGTATAATAATCTATCTGCTA 17996 ||||| | | | | || | |||| | || ||| | ||| |||||||| || | Sbjct 27493 GGATTTTTTGAATAA-AAGACTTTTGA-GCATCCTAAACATTCTAACAATCTATCAGCCA 27436 Query 17997 CAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTA-GTCTGAAAGGTAGA 18055 ||||||| | ||||||||||| || ||||||| |||| | ||| || |||| | Sbjct 27435 CAAATTCAATGTATTGTGACATTAATCTTGAATTCATTCCTATCAAGTCACAA-GGTAAA 27377 Query 18056 GCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTA 18115 | ||| |||||| | |||| || || | ||||||| || || || | Sbjct 27376 GATTCACATATAAATGATCGTTCTACTTCTACTGCTTCTTTTACAATATTCTGAACAATT 27317 Query 18116 GATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGT 18175 || ||| |||||||| | || |||| || |||||| ||| || || ||| Sbjct 27316 TCTTCTGGTAATTTATTTTCCAGCAGACTATA---TATTAAACAGTTAAAGTCTGTATGT 27260 Query 18176 AAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtt 18235 || ||||||||||| |||||||| |||||||| |||| ||| | | | || | | Sbjct 27259 AATCCTTCATCTCTACTAATTAATTCATTACTAAAAGTTAGCCCATGTAATTTATTTTGT 27200 Query 18236 ttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCG 18295 ||||| | ||| || || | ||||||| | ||| |||||||| || || || || Sbjct 27199 TTTTTAAACCAGAAAATAGCACAAAAACTACCACTAAACAATATACCTTCTACACATGCA 27140 Query 18296 AACGCTATTAATCTTTCAGCAAAACTGTATT--TATTGCTCAGTATCCATTTTTGTGCCC 18353 |||| || | ||| |||||| | ||| |||| | | ||||||| |||| Sbjct 27139 TTTGCTACTATCCGTTCTGCAAAA--GAATTGGTATTATTAA---TCCATTTGGCAGCCC 27085 Query 18354 ATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTT 18413 | ||| | | |||||| | ||||| || | ||| |||| | | Sbjct 27084 ACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTATTGCGTGAAATAAATTTAATCGCT 27025 Query 18414 CTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTT 18473 | || ||| ||||||||| | || || |||||| || |||| ||||| || | | Sbjct 27024 CCTTTTCATCCTTTATATAATTATCAATCAACAAACTGTAAGTTTCTGAATGAATATTCT 26965 Query 18474 CCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAA 18533 ||| ||||| |||||| |||||| |||| || | ||||| || || ||| Sbjct 26964 CCACTGCTATTTGAAAAGAATAAAATTTCTTAGCTTCCGTTATTTGAACTTCTCTTAAAA 26905 Query 18534 ATCTTTCTA-CCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACA 18592 || || ||| ||||||| || |||||| || ||| | ||| |||||||| || ||| Sbjct 26904 AT-TTACTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTGCAAAAAATGCTAACACA 26846 Query 18593 TATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC-CATTCATCTATATCTTTTGA 18651 | ||| || |||||||||||||| || || | ||| ||| | || | | ||| |||| Sbjct 26845 TGTTTTATAAAATGTTTTTCATTTTCATTTA-ATTTTTCAAAATCTTTCAAATCGCTTGA 26787 Query 18652 TAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTA 18699 || ||| | ||||| | ||||||||| || | ||| || | ||| || Sbjct 26786 TAAATCTATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTTTATA 26739 >seq124 Length=28153 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||| || |||||||| || || | || || || || Sbjct 11535 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACTCTTGATGTTGAGCCATCA 11476 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || |||||||||||| || ||||| || || || || ||| Sbjct 11475 GATACCATTGAGAATGTTAAGGCTAAAATACAAGACAAGGAAGGAATTCCACCTGATCAA 11416 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||| || | ||| || || || | |||||| ||||| || || ||||| || Sbjct 11415 CAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTGTCGGATTACAAC 11356 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || || || ||||| |||||||||||||| ||| Sbjct 11355 ATTCAAAAAGAGTCAACCCTACACTTAGTTTTAAGATTAAGAGGTGGT 11308 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||| || |||||||| || ||| | || || || || Sbjct 11763 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACACTTGATGTTGAGCCATCA 11704 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| ||||| || ||||| || || || || ||| Sbjct 11703 GATACCATTGAGAATGTTAAGGCAAAAATTCAAGACAAGGAAGGAATTCCACCTGATCAA 11644 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||| || | ||| || || || | |||||| ||||| |||||||| || || Sbjct 11643 CAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGTAGAACATTATCAGACTACAAC 11584 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || | || ||||| |||||||||||||| ||| Sbjct 11583 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTAAGATTAAGAGGAGGT 11536 Score = 105 bits (116), Expect = 1e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 ||||||||||| || | || || ||| || |||| |||| || || || ||| Sbjct 11964 GGAAAAACTATAACTCTTGATGTTGAACCATCGGATACTATTGAGAATGTTAAGGCAAAA 11905 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || |||||||| ||||| || || || || ||||| ||||| || | ||| || || || Sbjct 11904 ATTCAAGATAAGGAAGGAATTCCACCTGATCAACAGAGATTAATATTTGCGGGAAAACAA 11845 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTA 156029 | |||||| ||||| || || ||||| || || |||||| | || | || ||| Sbjct 11844 TTAGAAGATGGAAGAACATTGTCGGATTACAACATTCAAAAAGAGTCCACTTTACACTTA 11785 Query 156030 GTGTTAAGATTAAGAGGCGGT 156050 || |||||||||||||| ||| Sbjct 11784 GTCTTAAGATTAAGAGGAGGT 11764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731863281574800