Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq392 291 2e-73 seq124 178 3e-39 seq60 141 2e-28 >seq392 Length=30882 Score = 291 bits (322), Expect = 2e-73 Identities = 547/796 (69%), Gaps = 28/796 (4%) Strand=Plus/Minus Query 49581 GATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAAT 49640 ||||| |||| ||| ||| ||| |||||||| | || | || | |||| | | | Sbjct 27517 GATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAA-AAGACTTTTGAGCATCCTAA 27459 Query 49641 ACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCAT 49699 |||| ||| |||||||| || |||||||||| ||||||||||||||| ||||||| Sbjct 27458 ACATTCTAACAATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAATTCAT 27399 Query 49700 ACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttg 49759 || | || | | | ||||| | ||| |||||| | ||||| |||||| |||| Sbjct 27398 TCCTATCAAGTCACAAGGTAAAGATTCACATATAAATGATCGTTCTACTTCTACTGCTTC 27339 Query 49760 tttaattatcataattatattattttttgataatttatatttaatatgattcgcatatat 49819 ||| | || | | | | | || || |||||||| || | || | |||||| Sbjct 27338 TTTTACAATATTCTGAACAATTTCTTCTGGTAATTTATTTTCCAGCAGACT---ATATAT 27282 Query 49820 taaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 |||||| ||| || |||||||| || || || ||| || ||||||||||||||||| Sbjct 27281 TAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAAGT 27222 Query 49880 TAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAA 49938 || || || ||| || | | ||||||| ||| || || | |||||||| | || Sbjct 27221 TAGCCCATGTAATTTATTTTGT-TTTTTAAACCAGAAAATAGCACAAAAACTACCACTAA 27163 Query 49939 AGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TATC 49996 | |||||||| || ||||| ||| ||||| ||| | | || ||| | |||| ||| Sbjct 27162 ACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAA--AAGAATTGGTATT 27105 Query 49997 ATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTAT 50056 || || ||||| || |||||| ||||| ||||| | || |||||||||||||| Sbjct 27104 AT-TA--ATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTAT 27048 Query 50057 AGCTTTAAAT-AATTCA-----tttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAA 50110 || | |||| |||| | | ||||||| || || Sbjct 27047 TGCGTGAAATAAATTTAATCGCTCCTTTTCAT------CCTTTATATAATTATCAATCAA 26994 Query 50111 TAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCT 50170 ||| || |||| ||||| | | |||| ||||||||||| |||||||||| ||| Sbjct 26993 CAAACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATT-TCT 26935 Query 50171 T-GCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATAC 50229 | ||||| | |||||||| || ||| | | ||||| || | || || | Sbjct 26934 TAGCTTCCGTTATTTGAACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTC 26875 Query 50230 CATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTA 50289 ||||| |||||| || |||||||| || | ||| ||||||||||||||||| || |||| Sbjct 26874 CATCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTA 26815 Query 50290 AATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATG 50349 | ||||| || || | |||| |||||||||||| |||||| |||||||||||| | Sbjct 26814 ATTTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAG 26755 Query 50350 CTACGGATTTTTTATA 50365 || | | ||||||||| Sbjct 26754 CTTCTGCTTTTTTATA 26739 >seq124 Length=28153 Score = 178 bits (196), Expect = 3e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || ||||||||| | | ||| ||||| |||| || | |||||| || || ||||| Sbjct 11305 AAAACCACCTCTTAATCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATC 11364 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || ||||||| | |||| || |||||||| || ||||| |||||||||||||||||||| Sbjct 11365 CGACAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGG 11424 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||| || |||||||||||| || ||||| || | |||||| | || Sbjct 11425 TGGAATTCCTTCCTTGTCTTGTATTTTAGCCTTAACATTCTCAATGGTATCTGATGGCTC 11484 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || ||||| || ||||||||||| | ||| || ||||| Sbjct 11485 AACATCAAGAGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11535 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| ||||| |||||||| | |||||| || || || || Sbjct 11534 ATACCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCT 11593 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||||| |||| || |||||||| || ||||| ||||||||||||||||||||| Sbjct 11594 GATAATGTTCTACCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGT 11653 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| ||||| || ||||| || | |||||| | || Sbjct 11654 GGAATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCA 11713 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || ||||| || ||||||||||| | ||| || ||||| Sbjct 11714 ACATCAAGTGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Score = 159 bits (176), Expect = 7e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| ||||| |||||||| | |||||| || || ||||| Sbjct 11762 ATACCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCC 11821 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||||| | |||| || |||||||| || ||||| ||||||||||||||||||||| Sbjct 11822 GACAATGTTCTTCCATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGT 11881 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| ||||| || ||||| |||| ||| || | ||| Sbjct 11882 GGAATTCCTTCCTTATCTTGAATTTTTGCCTTAACATTCTCAATAGTATCCGATGGTTCA 11941 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 || || ||||| || ||||| || Sbjct 11942 ACATCAAGAGTTATAGTTTTTCC 11964 >seq60 Length=41302 Score = 141 bits (156), Expect = 2e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 192324 TAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCAT 192382 || ||| || || ||||||| ||| ||| || ||||| || |||||||| |||| | ||| Sbjct 6146 TATTACCAAGTGCAAAGTAGACTCCTTTTGA-ATATTGTAGTCAGATAAGGTTCTTCCAT 6088 Query 192383 CATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTAT 192442 | || | ||||| || ||||| |||| ||| ||||| || ||||| ||||| || |||| Sbjct 6087 CTTCTAGCTGTTTTCCTGCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTAT 6028 Query 192443 CTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGG 192502 |||| ||||| |||||||| |||| || || | ||| || || || ||||||| Sbjct 6027 CTTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGG 5968 Query 192503 TTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||| || |||| ||||| | || || |||||||| Sbjct 5967 TTTTTCCCGTTAGAGTTTTTACGAAAATTTGCATTTT 5931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984467979191550