Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq392 304 2e-77 seq124 168 1e-36 seq60 150 3e-31 >seq392 Length=30882 Score = 304 bits (336), Expect = 2e-77 Identities = 572/844 (68%), Gaps = 18/844 (2%) Strand=Plus/Minus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 |||| || || || | |||| ||||||||||||| ||||||||||||| | ||||| | Sbjct 27570 ATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGAAGAGATATCA 27511 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TAT 38948 ||| ||| ||| ||| |||||||| | | || || | |||| | | | ||| | | Sbjct 27510 AATCCATCCAATTAAAAGGATTTTTTG-AATAAAAGACTTTTGAGCATCCTAAACATTCT 27452 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 || |||||||| ||||||||||||| |||||| |||||||| ||||||| || | Sbjct 27451 AACAATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAATTCATTCCTATC 27392 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || | | | ||||| | ||| |||||| | ||||| |||||| |||| ||| | Sbjct 27391 AAGTCACAAGGTAAAGATTCACATATAAATGATCGTTCTACTTCTACTGCTTCTTTTACA 27332 Query 39069 atcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACAT 39128 || | | | | | || || |||||||| || | || | ||||| |||||| Sbjct 27331 ATATTCTGAACAATTTCTTCTGGTAATTTATTTTCCAGCAGACT---ATATATTAAACAG 27275 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC- 39187 ||| || |||||||| ||||| || ||| || ||||||||||||||||||| || Sbjct 27274 TTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAAGTTAGCCCA 27215 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 39247 || ||| || | | ||||||| ||| || || | |||||||| | ||| ||||| Sbjct 27214 TGTAATTTATTTTGT-TTTTTAAACCAGAAAATAGCACAAAAACTACCACTAAACAATAT 27156 Query 39248 ACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TATCATCTAAA 39305 ||| || ||||| ||| ||||| ||| | | || ||| | |||| ||| || | Sbjct 27155 ACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAA--AAGAATTGGTATTAT---TA 27101 Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 39365 ||||| || ||||| ||||| ||||| | || |||||||||||||| || | | Sbjct 27100 ATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTATTGCGTGA 27041 Query 39366 AATAA--TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACA 39423 ||||| || || | || Sbjct 27040 AATAAATTTAATCGCTCCTTTTCATCCTTTATATAATTATCAATCAACAAACTG--TAAG 26983 Query 39424 TTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAAT 39483 |||| ||||| | | |||| ||||||||||| |||||||||| | | ||||| | Sbjct 26982 TTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATTTCTTAGCTTCCGTTA 26923 Query 39484 ACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 39543 |||||||| || ||| | | ||||| || | || || |||||| ||||| Sbjct 26922 TTTGAACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTG 26863 Query 39544 CGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG 39603 | || |||||||| |||| ||| ||||||||||||||||| || ||||| ||||| || Sbjct 26862 CAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAAT 26803 Query 39604 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTT 39663 || | |||| |||||||||||| |||||| ||||||||| || ||| | | ||||| Sbjct 26802 CTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTT 26743 Query 39664 TATA 39667 |||| Sbjct 26742 TATA 26739 >seq124 Length=28153 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||||||||| | || ||| ||||| |||| || | |||||| ||| || ||||| Sbjct 11305 AAAACCACCTCTTAATCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATC 11364 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || || | || | | || || |||||||| || ||||| |||||||||||||| ||||| Sbjct 11365 CGACAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGG 11424 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| |||||||| || |||||||||||| || ||||| || |||||||| | || Sbjct 11425 TGGAATTCCTTCCTTGTCTTGTATTTTAGCCTTAACATTCTCAATGGTATCTGATGGCTC 11484 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||| || ||||||||||| | || || ||||| Sbjct 11485 AACATCAAGAGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11535 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| ||||| |||||||| | |||||| ||| || || ||| Sbjct 11534 ATACCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCT 11593 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || |||||||| || ||||| |||||||||||||| |||||| Sbjct 11594 GATAATGTTCTACCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGT 11653 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| ||||| || ||||| || |||||||| | || Sbjct 11654 GGAATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCA 11713 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || ||||| || ||||||||||| | || || ||||| Sbjct 11714 ACATCAAGTGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| ||||| |||||||| | |||||| ||| || ||||| Sbjct 11762 ATACCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCC 11821 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | | || || |||||||| || ||||| |||||||||||||| |||||| Sbjct 11822 GACAATGTTCTTCCATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGT 11881 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| ||||| || ||||| |||||||| || | ||| Sbjct 11882 GGAATTCCTTCCTTATCTTGAATTTTTGCCTTAACATTCTCAATAGTATCCGATGGTTCA 11941 Query 172020 ACTTCTAGAGTAATGGTTTTACC 172042 || || ||||| || ||||| || Sbjct 11942 ACATCAAGAGTTATAGTTTTTCC 11964 >seq60 Length=41302 Score = 150 bits (166), Expect = 3e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 171857 TAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTC 171916 || ||| || || ||||||| ||| || |||||| || || ||||| | || | | || Sbjct 6146 TATTACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATC 6087 Query 171917 ATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATC 171976 || | ||||| || |||||||||| ||| |||||||| ||||| ||||| || ||||| Sbjct 6086 TTCTAGCTGTTTTCCTGCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATC 6027 Query 171977 TTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGT 172036 ||| ||||| |||||||| ||||| || || | ||| || || || |||||||| Sbjct 6026 TTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGT 5967 Query 172037 TTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAA 172079 ||| || |||| ||||| | ||| || |||||||| ||||| Sbjct 5966 TTTTCCCGTTAGAGTTTTTACGAAAATTTGCATTTTTGTATAA 5924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905125217567400