Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq377 174 5e-38 seq747 167 7e-36 seq27 141 3e-28 seq163 116 1e-20 seq408 102 2e-16 >seq377 Length=56005 Score = 174 bits (192), Expect = 5e-38 Identities = 345/499 (69%), Gaps = 15/499 (3%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||| ||||| | | ||||| ||||| ||||||||||| |||| || || | || Sbjct 21679 ATCAAATCTACCTGGTCTAGTTATAGCTGGATCTAATATATCTACTCTATTAGTACCAGC 21620 Query 288912 CAATACAACAA---TAG-ATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGAT 288967 || | |||| || ||| | | | | ||| |||||||| ||| ||||| | Sbjct 21619 TAAAATGACAACTTTATCATTAGATGTA-TGAAAACCATCCATTTCGACTAACATTTGGT 21561 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTG--AATCACCCGAATCGCTCCtttt 289025 | | ||| | ||| || ||||||||| ||||| | |||| || | | || |||| Sbjct 21560 TTAATGTATTTTCTCTCTCATCATTTCCACCTCCCGCAAATCCTCCTTTT-GATCTTTTT 21502 Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 || || || ||||| ||||| ||||| ||||| | | | |||| || || ||| || Sbjct 21501 CTT-CCTACTGCATCTATTTCATCAATAAAAATTATAGATGGAGCATGTTTTCTTGCTTG 21443 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 ||||||||||||||||| | |||| ||||| ||| ||| ||| ||| | ||| ||| Sbjct 21442 AGCAAATAATTCTCTTACTCTTGATGGTCCAATACCTACAAACACTTCGATAAAATCACT 21383 Query 289146 AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | | | || ||| | ||||| ||||| ||||| ||||| | || || | ||| Sbjct 21382 TCCACTAATATTAAAGAAAGGAACATTAGCTTCTCCTGCAACTGCTTTAGCTAGTAATGT 21323 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 || |||||||| |||| || |||||| | |||||||||| |||||| ||| || Sbjct 21322 TTTCCCTGTTCCTGGTGCACCACATAATAGTGCACCCTTTGGTATTTTTGCTCCA--AGT 21265 Query 289266 CTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 || ||||| || | |||||||| ||||||| |||| | ||| | |||||| Sbjct 21264 ATTTCGTATTTAGATGGATTTTTTAAAAAGTCTACAAATTCCATTATTTCTTCTTTTGCT 21205 Query 289324 T-CATCACATCCTGCTACA 289341 | ||| | ||||||||| Sbjct 21204 TGTTTCATA-CCTGCTACA 21187 >seq747 Length=95849 Score = 167 bits (184), Expect = 7e-36 Identities = 240/336 (71%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 || |||||| || || ||||||||||| |||||||| | | ||| |||| || || | Sbjct 22783 CTTCTTTTTGATCCTACTGCATCAATTTCATCAATGAAGACAATACATGGAGCATGTTTT 22842 Query 289078 CTCGCA-ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTAC 289136 | ||| |||| ||||| |||||||| | ||| || | |||||| |||||||| | Sbjct 22843 TTAGCAGATTG-AAATAGTTCTCTTATTCTTCTTGCACCTACACCAACGAACATTTCTTC 22901 Query 289137 AAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGC 289196 |||||| ||| | ||| |||||| || | ||||| ||||| ||||||| || || || Sbjct 22902 AAATTCTGAACCCGATGCTTGAAGAAAAGGCACATTAGCTTCACCTGCTATGGCTCTAGC 22961 Query 289197 CAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC 289256 | | ||| || ||||| || ||| ||| |||||| | ||| || |||| |||||| Sbjct 22962 AATTAATGTTTTTCCTGTGCCTGGTTCTCCTGATAATAGTATTCCTTTAGGTAATTTTGC 23021 Query 289257 CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATA 289316 || || |||| || | | |||||| | || | |||||| ||||| || | Sbjct 23022 ACCTATTTTTGTAAATTTATCTGAATTTTTTAAATAATCAATAATTTCTTCAAGCTCTTG 23081 Query 289317 TTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||| | |||||||| ||| |||||| ||||| || Sbjct 23082 TTTTACTTCATCACAACCTTTTACATCTGCAAAGGT 23117 >seq27 Length=5678 Score = 141 bits (156), Expect = 3e-28 Identities = 444/686 (65%), Gaps = 15/686 (2%) Strand=Plus/Plus Query 155853 TCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACA 155912 ||||| ||||| ||||| | || || || | | | |||| ||| ||| | |||| Sbjct 1713 TCACTTAGTCCTGGGCATTCATTTGGACACATTAAAGTCCAATTTTGATTTTCTTTTACT 1772 Query 155913 CGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCC 155972 | | ||| || | ||| |||||| |||||| || | || ||||| || | || Sbjct 1773 CTTTTCATGAACAAGTCAGGAACCCAAACAGCATAAAACAAATCTCTTGCTCTTAATTCT 1832 Query 155973 TCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCC 156032 || | ||| ||||| || | || ||||| ||||| ||||| | ||| ||| || Sbjct 1833 TCTTTGCCATGATTTTTTCTTAAATCTAAAAATTCGAATATATCTGAATGCCATGGTTCA 1892 Query 156033 AGATACATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTC 156089 | ||| | ||||||| ||| || || || || || ||||||||||| | ||| || Sbjct 1893 ATATAAACAGCAAAAGAACCTTTTCTTTTTCCTCCTCCTTGATCTACATATCTAGCTGTA 1952 Query 156090 TTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATA 156149 | ||| || || | || |||||| | | ||||| ||| | ||||| || || | |||| Sbjct 1953 TCATTAAAAACTCTTAACATAGGTACGAGTCCATTTGAAATTCCATTCGTACCTCTAATA 2012 Query 156150 TGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAA 156209 | |||| | | | || || | || || |||||||| | |||| | Sbjct 2013 TACGAATTTTGTCCTCTTATATCTTGTACTGCTACACCTATACCACCAGCTGTTTTACTA 2072 Query 156210 ATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGAT 156269 || |||| || | |||| || | ||| |||||||| || ||||| || ||| ||| Sbjct 2073 ATAAGAGCACACTGTTTTAGTGTTTCGAATATACCTTCTATTGAATCTGATTTCATAGAT 2132 Query 156270 AGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTT 156329 | ||| | || || | ||| |||| || || |||| || |||| ||| ||||| Sbjct 2133 AAAAGAAAACAAGACGACATTTGGGGTCTAGGAGTACCAGAATTAAATAATGTTGGTGTA 2192 Query 156330 GCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC-----CTTAATCT-TCTCA 156383 |||||| | ||||| || | |||||| ||| || || || ||| |||| | ||| Sbjct 2193 GCATGAGTGAAATATTTTTGAGACATCAAATGATAAGTTTCTAATGCTTTATCTATATCA 2252 Query 156384 AGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACA 156443 | || || |||| || || || ||||| | | ||| || || | || | | Sbjct 2253 TCAATA------TGTATACCTATCGATACTCTCATTAATAAATGTTGTGGTCTTTCAATA 2306 Query 156444 ATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCA 156503 || | ||| || | | || | | ||| | || ||||| || ||||||||| Sbjct 2307 ATTTTGTTGTTAATACGTAATAAATAAGATCTTTCTAATGTCTTAAATCCAAAATAATCA 2366 Query 156504 AACAGAAAATCACGGTTGTAATCAAT 156529 | ||||||||| | |||||||| Sbjct 2367 TAATTAAAATCACGTGTATAATCAAT 2392 >seq163 Length=29775 Score = 116 bits (128), Expect = 1e-20 Identities = 220/324 (68%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAAT 289095 ||||||||||| || || ||||| | || |||||| || ||| || | ||||||| Sbjct 29386 GCATCAATTTCATCTATAAAAATAATGCAGGGAGAAACTTTTCTTGCCTTATCAAATAAC 29445 Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 ||||| || | ||| |||| |||||| |||| || |||| || | | || || Sbjct 29446 TCTCTAACTCTCTTTGCCCCAACTCCAACAAACATATCATCAAAACTAGCACCAGAAGCT 29505 Query 289156 TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTT 289215 | || |||| ||||| | || |||| || ||| | || | |||||| ||||| || Sbjct 29506 TCTATAAATGGAACATTAGACTCTCCTGAAACAGCCTTAGCTAAAAGTGTTTTACCAGTC 29565 Query 289216 CCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTC 289275 ||||| ||||| | || | || |||||||| | | | || || ||| ||||| Sbjct 29566 CCAGGCGGTCCATACAAAATTACACCCTTTGGAATTCTAGCTCCCATAGATGAGTATTTT 29625 Query 289276 TCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCT 289335 | ||| || |||| ||| || || | ||| || ||||| | ||| | || | | ||| Sbjct 29626 TTAGGTCTTTTTAGAAAATCAACTAATTCTTCCAGTTCTTCTTTCTCTTCTTTAATTCCC 29685 Query 289336 GCTACATCAGCAAAAGTAATATTA 289359 ||||| || ||| || | |||| Sbjct 29686 GCTACGTCCTTAAAGGTCACATTA 29709 >seq408 Length=28392 Score = 102 bits (112), Expect = 2e-16 Identities = 335/515 (65%), Gaps = 22/515 (4%) Strand=Plus/Minus Query 233275 ACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTTGA 233334 ||| || | |||||||||||| | |||||||||||||| ||| ||||||||||| |||| Sbjct 21207 ACCATGTGAAATCATACAATCTCTTTCCATTTCACCAAAACGTAGACCACCATCTCTTGA 21148 Query 233335 CCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTAAT 233394 || || | || |||||| || | | |||| || || | | | || || Sbjct 21147 TCTTCCTTCTGTTGGTTGACGTGTAATCATAGTTAAAGGTCCTCTACTTCTAGCATGTAT 21088 Query 233395 TTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATAGTTCTGC 233454 |||||||| ||||||||| || | || ||||||| |||||||||||| | || || Sbjct 21087 TTTATCTTCAACCATATGTTTTAACCTTTGATAATAAGTCGGACCAATAAAAATTTTTGA 21028 Query 233455 GTGTAATTGTTCCCCAGATTCACCGCTGTATAAAACTTCATTACCCGATGAATTGTAACC 233514 | ||| || |||| | || | ||||| | ||||| || || | || || Sbjct 21027 TTTTAACATTTTCCCATTATGTCCATTATATAATATATCATTTCCATATTTCTCATATCC 20968 Query 233515 -AATATCT----TTTAATAGAGAACCAAATACCTGATGCTTTGGACCTTTATTAGCAAAC 233569 ||| | | |||| | || || | | ||| || | | | |||| ||| Sbjct 20967 TAATTTATGCAATTTATTTGA-----AATTTCTTGA-ACTGT-----TATTTTAGAAAAT 20919 Query 233570 GCAGTACAATCACCAAAACCACCATACGTCGCACACGCTTTACCCATTAAAGTTTCTATC 233629 | || ||| || || || | | || | |||| || ||| ||||| Sbjct 20918 GGTGTTGCATCCCCTTCACTTCCTTCTATTGCTGCCACTTTTCCTGACAAACATTCTACT 20859 Query 233630 AACTGACCGATAGTCATTCTACTTGGTAGAGCGTGTGGATTGATAATTAAATCTGGACGT 233689 || || || |||||||| | | ||| | ||| |||||||| ||||||| ||||||| | Sbjct 20858 AAATGCCCAATAGTCATACGAGATGGAACAGCATGTGGATTCATAATTATATCTGGATAT 20799 Query 233690 ACTCCCTCCGATGTAAAAGGCATATCTT--TTTCAGGGAT-TATCAGTCCAACTGTTCCC 233746 || || || |||| |||||||||| ||| || | | | ||| | ||| ||| Sbjct 20798 GTACCATCTGAACTAAATGGCATATCTTCAATTC---TATATGTAATTCCTATTGTACCC 20742 Query 233747 TTTTGGCCGCATCTACTACAGAATTTATCACCCAT 233781 ||||| || |||||| ||||||||||| || Sbjct 20741 TTTTGTCCATGTCTACTTGCAAATTTATCACCTAT 20707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471799628647161