Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq124 116 3e-21 seq60 116 3e-21 >seq124 Length=28153 Score = 116 bits (128), Expect = 3e-21 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| |||| || ||||| || || || || || || |||| | Sbjct 11535 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACTCTTGATGTTGA-GCCATC 11477 Query 24764 -GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 || || | || || | ||| | ||| || |||||||| |||||||| || || |||| Sbjct 11476 AGATACCATTGAGAATGTTAAGGCTAAA-ATACAAGACAAGGAAGGAATTCCACCTGATC 11418 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 |||| | || || ||||| || ||||| | || ||| |||| |||| ||||| | Sbjct 11417 AACAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTGTCGGATTACA 11358 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 |||||||||| || || || |||||||| || || |||| Sbjct 11357 ACATTCAAAAAGAGTCAACCCTACACTTAGTTTTAAGATT 11318 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| |||| || ||||| || || || || || || |||| | Sbjct 11763 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACACTTGATGTTGA-GCCATC 11705 Query 24764 -GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 || || | || || | ||| ||||| || |||||||| |||||||| || || |||| Sbjct 11704 AGATACCATTGAGAATGTTAAGGCAAAA-ATTCAAGACAAGGAAGGAATTCCACCTGATC 11646 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 |||| | || || ||||| || ||||| | || ||| |||| | ||||| || | Sbjct 11645 AACAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGTAGAACATTATCAGACTACA 11586 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||| || || || ||||||| || || |||| | ||||| Sbjct 11585 ACATTCAAAAAGAGTCCACTTTACACTTAGTCTTAAGATTAAGAGGAGG 11537 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAAACAAAA 24789 || |||||||| || || || || ||| | | || || | || || | ||| ||||| Sbjct 11964 GGAAAAACTATAACTCTTGATGTTGAACCATCGGATACTATTGAGAATGTTAAGGCAAAA 11905 Query 24790 GATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACA 24849 || ||||| || |||||||| || || |||||||| | || || ||||| || ||||| Sbjct 11904 -ATTCAAGATAAGGAAGGAATTCCACCTGATCAACAGAGATTAATATTTGCGGGAAAACA 11846 Query 24850 GCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTT 24909 | || ||| |||| |||| ||||| ||||||||||| || || || ||||||| Sbjct 11845 ATTAGAAGATGGAAGAACATTGTCGGATTACAACATTCAAAAAGAGTCCACTTTACACTT 11786 Query 24910 GGTGTTGCGATTGCGCGGAGG 24930 || || |||| | ||||| Sbjct 11785 AGTCTTAAGATTAAGAGGAGG 11765 >seq60 Length=41302 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| ||||| || ||||| |||||||| || || ||| | | Sbjct 5934 ATGCAAATTTTCGTAAAAACTCTAACGGGAAAAACCATTACGCTTGATGTCGAACCATCT 5993 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||| || ||||| || || ||||| || || || ||| Sbjct 5994 GACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAGGGAATTCCACCAGACCAA 6053 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || ||||| || |||||||| || ||| |||| | | || || || || Sbjct 6054 CAAAGACTAATTTTTGCAGGAAAACAGCTAGAAGATGGAAGAACCTTATCTGACTACAAT 6113 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||| || || | |||||||| Sbjct 6114 ATTCAAAAGGAGTCTACTTTGCACTTGGT 6142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449892240594840