Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq60 98.7 8e-16 seq124 95.1 1e-14 >seq60 Length=41302 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || || |||||| |||| || ||||||||||| | || || || Sbjct 5931 AAAATGCAAATTTTCGTAAAAACTCTAACGGGAAAAACCATTACGCTTGATGTCGAACCA 5990 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| | | | ||||| || ||| || || || || | || || Sbjct 5991 TCTGACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAGGGAATTCCACCAGAC 6050 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||||| |||| ||| || |||||||| || |||| ||||| | | || ||| Sbjct 6051 CAACAAAGACTAATTTTTGCAGGAAAACAGCTAGAAGATGGAAGAACCTTATCTGACTAC 6110 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 || |||||||| || ||||| |||||| |||| Sbjct 6111 AATATTCAAAAGGAGTCTACTTTGCACTTGGT 6142 >seq124 Length=28153 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| ||||| || ||||| || || | || ||||| Sbjct 11535 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACTCTTGATGTTGAGCCATCA 11476 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || || || ||||| ||||| | || |||||| Sbjct 11475 GATACCATTGAGAATGTTAAGGCTAAAATACAAGACAAGGAAGGAATTCCACCTGATCAA 11416 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || ||||| | || |||| |||||| || ||||||||||| Sbjct 11415 CAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTGTCGGATTACAAC 11356 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||| || || | ||| | || |||||| | |||| || Sbjct 11355 ATTCAAAAAGAGTCAACCCTACACTTAGTTTTAAGATTAAGAGGTGG 11309 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 |||||||| ||| | || | |||||| ||||| | || |||| |||||| || ||||| Sbjct 11877 GATCAACAGAGATTAATATTTGCGGGAAAACAATTAGAAGATGGAAGAACATTGTCGGAT 11818 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||||||||| || || || ||| | || |||||| | |||| || Sbjct 11817 TACAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTAAGATTAAGAGGAGG 11765 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| ||||| || ||||| || || | || ||||| Sbjct 11763 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACACTTGATGTTGAGCCATCA 11704 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || || ||| ||||| ||||| | || |||||| Sbjct 11703 GATACCATTGAGAATGTTAAGGCAAAAATTCAAGACAAGGAAGGAATTCCACCTGATCAA 11644 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || ||||| | || |||| |||||| | | || |||||| Sbjct 11643 CAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGTAGAACATTATCAGACTACAAC 11584 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||| || || || ||| | || |||||| | |||| || Sbjct 11583 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTAAGATTAAGAGGAGG 11537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412836804973829