Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_022920.1 Length=139738 Score E Sequences producing significant alignments: (Bits) Value seq183 89.7 5e-13 >seq183 Length=22570 Score = 89.7 bits (98), Expect = 5e-13 Identities = 291/443 (66%), Gaps = 12/443 (3%) Strand=Plus/Plus Query 98766 GGTAGTGGTGCTGTTTATCTAAATATATTCCATAATGATATCCTGGA-TTTATTAAGCTC 98824 ||||||||||| | ||| | || || || || ||||| | | || ||||| | | Sbjct 18864 GGTAGTGGTGCGGCATATTTGAACATTTTTCACTATGATTTGGTAGACTTTATCGAT-TG 18922 Query 98825 TAAGAAAATCAATGCCAGTGAATCTGTTAGACTAGATAAATTATCTATTGGTGTTACAAT 98884 ||| ||||| ||||| |||| ||| | | | | |||||||| | | | | Sbjct 18923 TAAAAAAATTAATGCAGATGAAAAGTCAAGAATTCAGACCCTTTCTATTGGATTAATAGT 18982 Query 98885 CCCTAACAAATTTATGGAGTTAGTTAAAGAAGGTAAA--CCTTTCTATACTTTTGATACT 98942 || |||| ||| | | |||| ||| ||| |||| | ||| |||| ||||| || Sbjct 18983 TCCCGACAAGTTTTTTCAATTAGCTAAGGAAAATAAAAACTTTTTTATA--TTTGA-ACC 19039 Query 98943 TACGAC-ATTAATAAAGTGTATGGTAAATATTTAGATGAGCTAAACATTGATGAATGGTA 99001 || || ||| | ||| ||||| || ||| || || | || ||||||| || Sbjct 19040 TAATACTATTTTTCAAGAATATGGAGTATTTTTGTCAGATTTAGATATGAATGAATGATA 19099 Query 99002 TGATAAGTTACTAGATAATGATAGTATCGGTAAAGTAAAACATGAT--GCTAGAGAAGTT 99059 ||| || ||| | ||| | ||| ||| ||| || || |||||| | || Sbjct 19100 TGACAAATTAGCTGTCAATCCAAATATTTTGAAA--AAAGAATTATCTGCTAGATTAATT 19157 Query 99060 ATGACAGATATTGCTAAAACGCAATTAGAATCAGGTTACCCTTATGTATTCTATATTGAT 99119 | || | || || ||| ||||| ||||| ||||| ||||| ||| | | ||||||| Sbjct 19158 CTTACCAAGATAGCGCAAATTCAATTTGAATCTGGTTATCCTTACGTAATATTTATTGAT 19217 Query 99120 AATGCTAATGATAATCACCCATTGAAAAACCTAGGTAAAGTTAAAATGAGTAACTTATGT 99179 ||||||||| | ||| | || ||||| |||| | | | |||||||| || | ||| Sbjct 19218 AATGCTAATAAAAATAATCCTTTGAAGGGAGTAGGGAGAATCAAAATGAGCAATCTTTGT 19277 Query 99180 ACAGAAATTTCACAATTACAAGA 99202 |||||||||| || |||| || Sbjct 19278 ACAGAAATTTTTCAGATACAGGA 19300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447028274712240