Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq124 194 3e-44 seq60 152 8e-32 >seq124 Length=28153 Score = 194 bits (214), Expect = 3e-44 Identities = 182/229 (79%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| || ||||||||||||||||||||||||| || ||||||| || | || | Sbjct 11762 TGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACACTTGATGTTGAGCCATCA- 11704 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || ||||| ||| || ||||| |||||||| |||||| Sbjct 11703 GATACCATTGAGAATGTTAAGGCAAAAATTCAAGACAAGGAAGGAATTCCACCTGATCAA 11644 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | || |||||||| ||||||||||| ||| |||||| ||| |||| || || Sbjct 11643 CAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGTAGAACATTATCAGACTACAAC 11584 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || |||||||| || ||| | || ||||| ||| ||||||||||||||| Sbjct 11583 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTAAGATTAAGAGGAGGTA 11535 Score = 190 bits (210), Expect = 3e-43 Identities = 187/239 (78%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| || ||||||||||||||||||||||||| ||| ||||||| || | || | Sbjct 11534 TGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACTCTTGATGTTGAGCCATCA- 11476 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || |||||||||| || ||||| |||||||| |||||| Sbjct 11475 GATACCATTGAGAATGTTAAGGCTAAAATACAAGACAAGGAAGGAATTCCACCTGATCAA 11416 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | || |||||||| ||||||||||| ||| ||||| || | ||||| || Sbjct 11415 CAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTGTCGGATTACAAC 11356 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 || |||||||| || || | || ||||| ||| |||||||||| ||| ||||| || Sbjct 11355 ATTCAAAAAGAGTCAACCCTACACTTAGTTTTAAGATTAAGAGGTGGTTTTTAAATTTT 11297 Score = 159 bits (176), Expect = 5e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 146057 AGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAAAATAA 146116 ||||||||| || ||| ||||||| |||| ||||||||| | ||||| || || Sbjct 11965 AGGAAAAACTATAACTCTTGATGTTGAACCATCGGATACTATTGAGAATGTTAAGGCAAA 11906 Query 146117 AATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACA 146176 ||| ||| ||| ||||| |||||||| |||||||| ||| | || ||||| || ||||| Sbjct 11905 AATTCAAGATAAGGAAGGAATTCCACCTGATCAACAGAGATTAATATTTGCGGGAAAACA 11846 Query 146177 ATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTT 146236 |||||| ||| ||||| || | ||||| || || |||||||| || ||| | || || Sbjct 11845 ATTAGAAGATGGAAGAACATTGTCGGATTACAACATTCAAAAAGAGTCCACTTTACACTT 11786 Query 146237 AGTATTACGATTAAGAGGAGGTA 146259 ||| ||| ||||||||||||||| Sbjct 11785 AGTCTTAAGATTAAGAGGAGGTA 11763 >seq60 Length=41302 Score = 152 bits (168), Expect = 8e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||| |||| |||||||| ||||| ||||||| |||| | Sbjct 5935 TGCAAATTTTCGTAAAAACTCTAACGGGAAAAACCATTACGCTTGATGTCGAACCATCTG 5994 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | |||||||| ||||| ||| ||| || || |||||||| || |||| Sbjct 5995 ACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAGGGAATTCCACCAGACCAAC 6054 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||||||||| ||||| |||| ||| ||||| ||| | || || |||| Sbjct 6055 AAAGACTAATTTTTGCAGGAAAACAGCTAGAAGATGGAAGAACCTTATCTGACTACAATA 6114 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTA 146243 | ||||| || || ||| | || || ||| || Sbjct 6115 TTCAAAAGGAGTCTACTTTGCACTTGGTAATA 6146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786157034792760