Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq124 132 4e-26 >seq124 Length=28153 Score = 132 bits (146), Expect = 4e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATCATC 29636 || || || || || || |||||||||||||| ||||||| |||| || | ||| || Sbjct 11327 ACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGACAAT-GTTCTTCCATCTTC 11385 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 | |||||| || ||| |||| ||||| || ||||| || ||||| || || |||||||| Sbjct 11386 TAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTCTTG 11445 Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 || ||| || ||| | || | || || || | || || ||||||||||| ||||| Sbjct 11446 TATTTTAGCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGAGTTATTGTTTT 11505 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| ||||| || ||||| Sbjct 11506 TCCTGTTAATGTTTTTACAAAGATTTGCAT 11535 Score = 125 bits (138), Expect = 6e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| |||||||||||||| || || | | || | | ||| || | |||||| || Sbjct 11567 GTGGACTCTTTTTGAATGTTGTAGTCTGATAATGTTCTACCATCTTCTAATTGTTTTCCT 11626 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| |||| ||||| || ||||| || ||||| || || |||||||| |||||||| || Sbjct 11627 GCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTCTTG-AATTTTTGCCTT 11685 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | || || || | || || ||||| ||||| ||||| || ||||| || Sbjct 11686 AACATTCTCAATGGTATCTGATGGCTCAACATCAAGTGTTATTGTTTTTCCTGTTAATGT 11745 Query 29769 TTTAACAAATATCTGCAT 29786 ||| ||||| || ||||| Sbjct 11746 TTTTACAAAGATTTGCAT 11763 Score = 120 bits (132), Expect = 2e-22 Identities = 133/172 (77%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATCATCGAGTTGTTTGCC 29648 ||||| |||||||||||||| ||||||| |||| || | ||| || | |||||| || Sbjct 11795 GTGGACTCTTTTTGAATGTTGTAATCCGACAAT-GTTCTTCCATCTTCTAATTGTTTTCC 11853 Query 29649 AGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TT 29707 ||| |||| ||||| || ||||| || ||||| || || || ||||| |||||||| | Sbjct 11854 CGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATCTTG-AATTTTTGCCT 11912 Query 29708 TGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCC 29759 | ||| | || | ||| || || |||| || ||||||||||||||||| || Sbjct 11913 TAACATTCTCAATAGTATCCGATGGTTCAACATCAAGAGTTATAGTTTTTCC 11964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385214725799373