Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq306 125 9e-24 seq408 98.7 1e-15 >seq306 Length=50732 Score = 125 bits (138), Expect = 9e-24 Identities = 312/467 (67%), Gaps = 19/467 (4%) Strand=Plus/Minus Query 168656 TGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTG 168715 ||| ||||| || || ||||| ||||||||||| ||| || ||| |||||| | | Sbjct 47711 TGACTTAGGACCTATATATGGTTTTCAATGGAGGCATTTCGGTGCTGAATATACAAA-TA 47653 Query 168716 TG-ATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACTTTAC 168774 || || | | || | ||||||| || ||||||| | | ||| || || Sbjct 47652 TGCATGCCAACTATGAAGATAAAGGAGTTGATCAATTAAAAAATATTATCCATTTAATAA 47593 Query 168775 ACAACAATCCGGAAAATAGAAGAATATTAATTAATAGT---TGGGATGTACCACAACTTG 168831 | || |||| | ||||||||| || || | || ||| |||| | | |||| Sbjct 47592 AAAATGATCCAACTAGTAGAAGAAT--TATTTTGT-GTGCATGGAATGTTAAAGATCTTG 47536 Query 168832 ATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATG----TAAGGAAAAAA 168887 || |||||| || || |||||||| | |||| |||||||||| | | | |||| Sbjct 47535 ATCAAATGGCACTACCTCCTTGTCATATTTTATGCCAATTTTATGTTTTTGATGGAAAAT 47476 Query 168888 TCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCTTAT 168947 | ||| | ||| |||||||||| ||| ||||||||| |||||||| |||| | Sbjct 47475 T--ATCATGTATT-----ATGTATCAAAGGTCATGTGATTTAGGTTTAGGAGTCCCTTTT 47423 Query 168948 AATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTAAATGGTGTAATTTGACGCCT 169007 ||||||| | |||||| | || || | | || | || ||||||||| |||| Sbjct 47422 AATATTGCCTCCTATTCAATATTCACTCATATGATTGCACAAGTGTGTAATTTACAGCCT 47363 Query 169008 GGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATGTTGAACCTTTA 169067 | | |||| || |||| ||| ||| ||| || || ||| || ||| |||| ||| Sbjct 47362 GCACAGTTCATACATATTTTAGGAAATGCACATGTTTATAATAATCATATTGACAGCTTA 47303 Query 169068 AAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAATT 169114 || || || || || || | ||| || | || |||| | ||||||| Sbjct 47302 AAAGTACAGTTAAATAGGATACCCTACCCCTTCCCAACTCTTAAATT 47256 >seq408 Length=28392 Score = 98.7 bits (108), Expect = 1e-15 Identities = 127/172 (74%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 193786 AAAAT--AAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGA 193843 ||||| ||||||||||| || || ||||||||||| | | |||||||||||| | || Sbjct 21024 AAAATCAAAAATTTTTATTGGTCCGACTTATTATCAAAGGTTAAAACATATGGTTGAAGA 21083 Query 193844 TAAAATGCATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTG 193902 |||||| |||||||||||| |||| | |||| ||||| || ||||||| | Sbjct 21084 TAAAATACATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-CGTCAACCAACAGAAG 21142 Query 193903 GTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTAT 193954 | | || || ||| ||| || | ||||| |||||||| | ||| ||||| Sbjct 21143 GAAGATCAAGAGATGGTGGTCTACGTTTTGGTGAAATGGAAAGAGATTGTAT 21194 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 193020 GGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGAAGACAGTATT 193079 || ||||||||||||||||| || || |||||||| |||||||||||||||||| | Sbjct 19792 GGAATTAATGCTATTGTTGCAATTATGTGTTATACTGGATATAATCAAGAAGACAGTTTA 19851 Query 193080 ATTTTAAATAAAGCTTCTATTGAAAGAGGATTATT 193114 ||| | || | | |||||||| ||||| || || Sbjct 19852 ATTATGAACCAGTCATCTATTGATAGAGGTTTGTT 19886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635170033446840