Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq408 96.9 5e-15 >seq408 Length=28392 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 201918 AAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATG 201977 ||||||||||| || || || || ||||| | | |||||||||||| | |||||||| Sbjct 21031 AAAATTTTTATTGGTCCGACTTATTATCAAAGGTTAAAACATATGGTTGAAGATAAAATA 21090 Query 201978 CATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGGTC 202036 ||||| |||||| || | |||| | |||||| |||||||||| || | || Sbjct 21091 CATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-CGTCAACCAACAGAAGGAAGATC 21149 Query 202037 CCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 202081 || |||||| || | ||||| |||||||||| ||||||||| Sbjct 21150 AAGAGATGGTGGTCTACGTTTTGGTGAAATGGAAAGAGATTGTAT 21194 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 201147 GGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGAAGATAGTGTT 201206 || |||||||| ||||| |||||| ||||| |||||||| ||||||||||| ||| | Sbjct 19792 GGAATTAATGCTATTGTTGCAATTATGTGTTATACTGGATATAATCAAGAAGACAGTTTA 19851 Query 201207 ATTCTTAATAAAGCATCTATTGAAAGAGGTTTATTC 201242 ||| | || | |||||||||| |||||||| ||| Sbjct 19852 ATTATGAACCAGTCATCTATTGATAGAGGTTTGTTC 19887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655272193977000