Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq124 100 3e-16 >seq124 Length=28153 Score = 100 bits (110), Expect = 3e-16 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | |||||||| || | || || |||||||| ||||||||||| | Sbjct 11309 CCACCTCTTAATCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGAC 11368 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | |||||| || ||| | || | | || ||||| || || Sbjct 11369 AATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGA 11428 Query 137305 ATGCCTTCTTTGTC-GGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTA 137362 || ||||| ||||| ||| |||| | ||| | | || | || |||| || || | Sbjct 11429 ATTCCTTCCTTGTCTTGTA--TTTTAGCCTTAACATTCTCAATGGTATCTGATGGCTCAA 11486 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 | |||| ||| | || || || || ||||||||||| || ||||||||| || Sbjct 11487 CATCAAGAGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCATACCT 11539 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| ||| | || ||||| || | || || |||||||| |||||||| || Sbjct 11537 CCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCTGAT 11596 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | |||||| || ||| | || | | || ||||| || || Sbjct 11597 AATGTTCTACCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGA 11656 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||||||| || | | || | || |||| || || || Sbjct 11657 ATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCAACA 11716 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| || | || || || || ||||||||||| || ||||||||| || Sbjct 11717 TCAAGTGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCATACCT 11767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488538180219600