Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq183 163 9e-35 >seq183 Length=22570 Score = 163 bits (180), Expect = 9e-35 Identities = 545/838 (65%), Gaps = 20/838 (2%) Strand=Plus/Plus Query 54138 ATGATTGAACAAAGATACCAACCAGCTACTCCAACTTTCCTAAATGCTGGTAGAAGCAGA 54197 || ||| ||||| || ||||| |||||||| |||||| |||||| | | || ||| Sbjct 18561 ATTATTAGACAAATTTATCAACCTGCTACTCCTACTTTCTCAAATGCCGCAAAAAAAAGA 18620 Query 54198 CGCGGAGAAATGGTTTCTTGTTTCTTATTAGAAATGGATGATAGCTTGAATTCAATTGGT 54257 ||| | | || |||||||| | ||||||| || ||| | |||||||| | Sbjct 18621 TCTGGAAAGTTAGTCTCTTGTTTTCTGTTAGAAACTGAAGATTCTATTAATTCAATCAAT 18680 Query 54258 TTCAATATCAATACTGCA---ATGCAATTATCTAAAATTGGCGGCGGCGTTGCCTTAAAC 54314 | |||| | | ||||| |||||| | |||| |||| || || || || |||| Sbjct 18681 T---ATATTATTGCTGCATCTATGCAACTTAGTAAAGTTGGGGGAGGAGTAGCAGTAAAT 18737 Query 54315 CTTTCTAAACTTAGAGGAAGAAAAGAGCAAATTAAA--GGTATTGATGATGCTGCTTCTG 54372 |||||||| | |||||||| || | |||||| |||| ||| | | ||||| | Sbjct 18738 CTTTCTAAGTTAAGAGGAAGGGGAGCGTCTATTAAAAAGGTA--GATAGTACAGCTTCAG 18795 Query 54373 GAGTAGTACCAGTTATGAAACTTTTAGAAGATAGCTTCTCTTATGCTAATCAGCTTGGCC 54432 |||| | || || | || | | |||||| || |||||| |||| | || Sbjct 18796 GAGTGCTTCCTGTATTAAAGATACTTGAAGATGTATTTGACTATGCTGATCAATTAGGAG 18855 Query 54433 AAAGAAAAGGCGCTGGAGCTGTTTACTTAAACATCTTCCACTGGGATATTATTGAATTCT 54492 ||| ||| ||| || | || || ||||| || |||| ||| | | || || Sbjct 18856 TTCGAAGAGGTAGTGGTGCGGCATATTTGAACATTTTTCACTATGATTTGGTAGACTTTA 18915 Query 54493 TAGATACTAAAAAGATCAATGCTGATGAAAAAGCCAGAATTCAATCTTTATCTATTGGAT 54552 | ||| |||||| || ||||| |||||||| | |||||||| | | |||||||||| Sbjct 18916 TCGATTGTAAAAAAATTAATGCAGATGAAAAGTCAAGAATTCAGACCCTTTCTATTGGAT 18975 Query 54553 TAATTGCTGAAAAAATCTTCTTCCAATTAGCAAAAAGAAACGAAGAAATGTATGTTTTTG 54612 |||| | | | | || || |||||||| || ||| || | | | | | |||| Sbjct 18976 TAATAGTTCCCGACAAGTTTTTTCAATTAGCTAAGGAAAATAAAAACTTTTTTATATTTG 19035 Query 54613 CTCCTCACTCGGTTTACAGAGCTTATGGTGAACATTTAGATGACATGGATTTAAATGTTA 54672 ||| | | ||| || ||||| | | ||| || | ||| | |||| | Sbjct 19036 AACCTAATACTATTTTTCAAGAATATGGAGTATTTTTGTCAGATTTAGATATGAATG-AA 19094 Query 54673 TG-TATGATAAGTTAGTTAAAAACCCAGCTGTTAAGAAACGTAAGTTAAATTTAACTGCT 54731 || ||||| || |||| | || ||| | || |||| || | | ||| ||||| Sbjct 19095 TGATATGACAAATTAGCTGTCAATCCAAATATTTTGAAA---AA---AGAATTATCTGCT 19148 Query 54732 CGCGAAATGCTTATTAAAATTGCTATTATTCAATTAGAATCTGGCTACCCTTATTTTATG 54791 | ||| |||| || || || |||||||| |||||||| || ||||| | || Sbjct 19149 AGATTAATTCTTACCAAGATAGCGCAAATTCAATTTGAATCTGGTTATCCTTACGTAATA 19208 Query 54792 TACAAAACTAACGCTAATGATACTCACGCATTAAAAGATATTGGCCAAGTTAAAATGAGT 54851 | | ||| |||||| | | | | | || || | | || | | |||||||| Sbjct 19209 TTTATTGATAATGCTAATAAAAATAATCCTTTGAAGGGAGTAGGGAGAATCAAAATGAGC 19268 Query 54852 AATCTTTGTACGGAAATCTTCCAATTACAAGAGACATCTACTATTAATAACTATGGTACT 54911 ||||||||||| ||||| || || |||| || | || ||||| || | ||||| Sbjct 19269 AATCTTTGTACAGAAATTTTTCAGATACAGGAAAGCTCCACTATAAAAGATTATGGAGAA 19328 Query 54912 GATGATGAAATCAAGAGA-GATATCAACTGTAATTTAGGTTCATTAAATATTGTTAAT 54968 || |||||||| |||| | ||| | || ||||||| |||| ||||| | |||||| Sbjct 19329 GAAGATGAAAT-AAGAAATGATGTGTCTTGCAATTTAGCTTCACTAAATTTAGTTAAT 19385 Score = 84.2 bits (92), Expect = 7e-11 Identities = 187/276 (68%), Gaps = 10/276 (4%) Strand=Plus/Plus Query 55514 TATTGAAGCTAGAACATATGCTAACTCTACAACATACTATCCAATGCCTTATTTGTCATT 55573 ||| ||| | ||| ||||| || || | ||||| | ||||||||||| ||| ||| Sbjct 19931 TATAGAAACAAGATTATATGGAAATTCAATTACATATTTTCCAATGCCTTTTTTATCAAA 19990 Query 55574 AGATA--CTTTCTGGTATTATAAATCAGCATATAATACAAATCAATTTAAATTAATTGAC 55631 ||||| |||| | | || |||||| || || | | | ||||| ||||||||||| Sbjct 19991 AGATAATCTTTAT-CTCTT-TAAATCTGCCTACGAAATAGATCAAAGAAAATTAATTGAT 20048 Query 55632 ATTATTGCTGAAATGCAAGAACATGTAGACCAAGGTATTAGTACAATTTTATATGT---A 55688 | ||| ||| ||||||||| |||| || || ||| ||| | |||||||| | Sbjct 20049 CTGTCTGCAACAATTCAAGAACATATAGATCAGGGAATTTCTACTGTATTATATGTAACA 20108 Query 55689 AATAGCGATATTACCACTAGCGAATTAGCTAGATATTATATTTATGCAAGTGAAAAAGGA 55748 |||| || || ||||| || |||| || | ||| | ||||| | | ||||| Sbjct 20109 AATAACG---CAACTACTAGAGACTTAGTTAAGTTATATTTGTATGCCCATTATAAAGGG 20165 Query 55749 TTAAAGAGTCTTTACTACACTAGAACGAATAATTTA 55784 ||||| ||||| || ||||| || || ||| Sbjct 20166 CTAAAGTCACTTTATTATGTGAGAACTAAAAACTTA 20201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591890962276544