Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq124 179 7e-40 seq60 179 7e-40 >seq124 Length=28153 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | |||||||| | ||| || ||||| || || || || || | Sbjct 11535 TACCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCTG 11594 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| ||||||| ||||||| ||||||||| ||||| |||| ||| |||||||| || | Sbjct 11595 ATAATGTTCTACCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTG 11654 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| |||||||| ||||| || ||||| ||||| ||||| || || | Sbjct 11655 GAATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCAA 11714 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||||| || || ||||| || || |||||||| || ||||| Sbjct 11715 CATCAAGTGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| || | | ||||||||| || || || ||||| || || || ||||| || Sbjct 11308 ACCACCTCTTAATCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGA 11367 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | |||| || ||||||| ||||||||| ||||| |||| ||| |||||||| || || Sbjct 11368 CAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGG 11427 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| ||||| || || || || ||||| ||||| ||||| || || || Sbjct 11428 AATTCCTTCCTTGTCTTGTATTTTAGCCTTAACATTCTCAATGGTATCTGATGGCTCAAC 11487 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | |||||| || || ||||| || || |||||||| || ||||| Sbjct 11488 ATCAAGAGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11535 Score = 163 bits (180), Expect = 6e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | |||||||| | ||| || ||||| || || || ||||| | Sbjct 11763 TACCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCCG 11822 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | |||| || ||||||| ||||||||| ||||| |||| ||| |||||||| || | Sbjct 11823 ACAATGTTCTTCCATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGTG 11882 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||||||||| ||||| || ||||| ||||| ||||| ||||| | Sbjct 11883 GAATTCCTTCCTTATCTTGAATTTTTGCCTTAACATTCTCAATAGTATCCGATGGTTCAA 11942 Query 82762 CTTCCAAAGTTATCGTCTTGCCT 82784 | || | |||||| || || ||| Sbjct 11943 CATCAAGAGTTATAGTTTTTCCT 11965 >seq60 Length=41302 Score = 179 bits (198), Expect = 7e-40 Identities = 170/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || ||||||| |||||| || || || ||||| || ||||||| |||| || |||||| Sbjct 6142 ACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCT 6083 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || |||||||| ||||| |||||||||||||| ||||| || ||||| |||||||||||| Sbjct 6082 AGCTGTTTTCCTGCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTGA 6023 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || ||||| |||||||| ||||| || ||| ||||| || || | || || || || Sbjct 6022 ATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTTT 5963 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTATTATAT 82818 || || | || ||||| || || |||||| || ||| Sbjct 5962 CCCGTTAGAGTTTTTACGAAAATTTGCATTTTTGTAT 5926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981815211583067