Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq60 102 2e-16 seq124 95.1 3e-14 >seq60 Length=41302 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| || || | || || ||| |||||||| | || Sbjct 5949 AAAACTCTAACGGGAAAAACCATTACGCTTGATGTCGAACCATCTGACACTATTGAGAAT 6008 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||| |||||||| || || |||||| || ||| |||||||| || || Sbjct 6009 GTAAAGGCAAAAATTCAAGATAAGGAGGGAATTCCACCAGACCAACAAAGACTAATTTTT 6068 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| ||| | ||||||||||| || || | || ||||| | || || |||||| Sbjct 6069 GCAGGAAAACAGCTAGAAGATGGAAGAACCTTATCTGACTACAATATTCAAAAGGAGTCT 6128 Query 206365 ACTCTTCAC 206373 ||| | ||| Sbjct 6129 ACTTTGCAC 6137 >seq124 Length=28153 Score = 95.1 bits (104), Expect = 3e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 206196 AGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAA 206255 ||||||||| || ||| | || || ||| || || || | || || ||| ||| Sbjct 11965 AGGAAAAACTATAACTCTTGATGTTGAACCATCGGATACTATTGAGAATGTTAAGGCAAA 11906 Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 |||||||| || ||||||||| || || || ||| | || || || ||||| || Sbjct 11905 AATTCAAGATAAGGAAGGAATTCCACCTGATCAACAGAGATTAATATTTGCGGGAAAACA 11846 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 || ||||||||||| || ||| | ||||||||| | || |||||||| ||| | ||| | Sbjct 11845 ATTAGAAGATGGAAGAACATTGTCGGATTACAACATTCAAAAAGAGTCCACTTTACACTT 11786 Query 206376 TGTTTTGAGA 206385 || || ||| Sbjct 11785 AGTCTTAAGA 11776 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | ||||||||||| || ||| | || || || || || || | || Sbjct 11520 AAAACATTAACAGGAAAAACAATAACTCTTGATGTTGAGCCATCAGATACCATTGAGAAT 11461 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || ||||||||| || || || ||| | || || Sbjct 11460 GTTAAGGCTAAAATACAAGACAAGGAAGGAATTCCACCTGATCAACAGAGATTAATATTT 11401 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| || || ||||||||||| || ||| | ||||||||| | || |||||||| Sbjct 11400 GCAGGAAAACAATTAGAAGATGGAAGAACATTGTCGGATTACAACATTCAAAAAGAGTCA 11341 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 || || ||| | ||||| ||| Sbjct 11340 ACCCTACACTTAGTTTTAAGA 11320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181806369598713