Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq124 132 4e-26 seq60 113 4e-20 >seq124 Length=28153 Score = 132 bits (146), Expect = 4e-26 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||||||||| |||||| | || || | || || || |||| | Sbjct 11763 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACACTTGATGTTGA-GCCATC 11705 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || || ||||||| || || || || || || || ||||| Sbjct 11704 AGATACCATTGAGAATGTTAAGGCAAAAATTCAAGACAAGGAAGGAATTCCACCTGATCA 11645 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 || ||| | || | | || |||||| | ||||||| ||||| | |||| | ||| Sbjct 11644 ACAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGTAGAACATTATCAG--ACTAC 11587 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||| ||||| | || ||||| |||||||| |||||||| Sbjct 11586 AACATTCAAAAAGAGTCCACTTTACACTTAGTCTTAAGATTAAGAGGAGG 11537 Score = 118 bits (130), Expect = 9e-22 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||||||||| |||||| | || || | || || || |||| | Sbjct 11535 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACTCTTGATGTTGA-GCCATC 11477 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || || ||||| || || || || || || || ||||| Sbjct 11476 AGATACCATTGAGAATGTTAAGGCTAAAATACAAGACAAGGAAGGAATTCCACCTGATCA 11417 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 || ||| | || | | || |||||| | ||||||| |||| |||| | ||||| Sbjct 11416 ACAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTGTCGG--ATTAC 11359 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||| || ||| | || ||||| |||||||| ||||| || Sbjct 11358 AACATTCAAAAAGAGTCAACCCTACACTTAGTTTTAAGATTAAGAGGTGG 11309 Score = 105 bits (116), Expect = 6e-18 Identities = 148/203 (73%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 25202 GGAAAATCGATCACGATCGAAGTCGAAGCCAACG-ATACTATCGAGCAAGTAAAACAAAA 25260 |||||| | || || | || || ||| ||| || ||||||| ||| | || || ||| Sbjct 11964 GGAAAAACTATAACTCTTGATGTTGAA-CCATCGGATACTATTGAGAATGTTAAGGCAAA 11906 Query 25261 AATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320 |||| ||||| || || || || || ||||| || ||| | || | | || ||||| Sbjct 11905 AATTCAAGATAAGGAAGGAATTCCACCTGATCAACAGAGATTAATATTTGCGGGAAAACA 11846 Query 25321 ACTCGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCAT 25378 | | ||||||| |||| |||| | ||||||| ||||||||||| ||||| | || Sbjct 11845 ATTAGAAGATGGAAGAACATTGTCGG--ATTACAACATTCAAAAAGAGTCCACTTTACAC 11788 Query 25379 TTAGTGTTAAGATTGAGAGGAGG 25401 ||||| |||||||| |||||||| Sbjct 11787 TTAGTCTTAAGATTAAGAGGAGG 11765 >seq60 Length=41302 Score = 113 bits (124), Expect = 4e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | || |||||||| |||| |||||| | || ||| | || |||||| || Sbjct 5931 AAAATGCAAATTTTCGTAAAAACTCTAACGGGAAAAACCATTACGCTTGATGTCGAA-CC 5989 Query 25232 AAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | | || ||||| ||| | ||||| ||||||| ||||| ||||| || || || || Sbjct 5990 ATCTGACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAGGGAATTCCACCAGA 6049 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 || |||||||| |||| | || ||||| || ||||||| |||| | || || Sbjct 6050 CCAACAAAGACTAATTTTTGCAGGAAAACAGCTAGAAGATGGAAGAACCTTATCTGACTA 6109 Query 25351 CAATATTCAAAAAGAATCCAC 25371 |||||||||||| || || || Sbjct 6110 CAATATTCAAAAGGAGTCTAC 6130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445089097812960