Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq60 122 9e-23 seq124 111 2e-19 >seq60 Length=41302 Score = 122 bits (134), Expect = 9e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 || || ||||||||||| |||||||| | || | | | | || || |||||||| || Sbjct 6130 GTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCA-TCTTCTAGCTGTTTTCC 6072 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 ||||||||| | | || || || || || || || || || |||||||||||| || Sbjct 6071 TGCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTGAATTTTTGCCTT 6012 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 || || | ||||| || | ||| || || || ||||||||||| || |||| ||| Sbjct 6011 TACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTTTCCCGTTAGAGT 5952 Query 134696 TTTAACGAAAATTTGCATTTT 134716 ||| ||||||||||||||||| Sbjct 5951 TTTTACGAAAATTTGCATTTT 5931 >seq124 Length=28153 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | || || || | ||||| ||||| || ||||||||||||||||| | Sbjct 11537 CCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCTGAT 11596 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | ||||| |||||||| || || | ||| ||||| || || Sbjct 11597 AATGTTCTACCA-TCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGG 11655 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || |||||||||||| || || || | || || || | || || Sbjct 11656 AATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCAAC 11715 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || ||||| ||||| || || |||||||| Sbjct 11716 ATCAAGTGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCC 134545 || ||||| | || || || | |||||| || || || |||||||||||||| | || | Sbjct 11309 CCACCTCTTAATCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGAC 11368 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | ||||| |||||||| || || | ||| ||||| || || Sbjct 11369 AATGTTCTTCCA-TCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGG 11427 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||| ||||| || || || | || || || | || || Sbjct 11428 AATTCCTTCCTTGTCTTGTATTTTAGCCTTAACATTCTCAATGGTATCTGATGGCTCAAC 11487 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||| || ||||| ||||| || || |||||||| Sbjct 11488 ATCAAGAGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11535 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | || || || | ||||| ||||| || |||||||||||||| || | | Sbjct 11765 CCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCCGAC 11824 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | ||||| || ||||| || || | ||| ||||| || || Sbjct 11825 AATGTTCTTCCA-TCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGTGG 11883 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || |||||||||||| || || || | || || || | ||| || Sbjct 11884 AATTCCTTCCTTATCTTGAATTTTTGCCTTAACATTCTCAATAGTATCCGATGGTTCAAC 11943 Query 134666 GTCGAGAGTAATGGTTTTACC 134686 || ||||| || ||||| || Sbjct 11944 ATCAAGAGTTATAGTTTTTCC 11964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505392379441560