Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq27 381 8e-101 seq392 232 9e-56 >seq27 Length=5678 Score = 381 bits (422), Expect = 8e-101 Identities = 1016/1518 (67%), Gaps = 57/1518 (4%) Strand=Plus/Plus Query 68703 ATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGT 68762 ||| || ||||| | |||||| ||| || ||||| | | ||||| ||||| || Sbjct 869 ATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATAAATGTTACTAGT 928 Query 68763 ATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 ||| ||||| | ||||| ||||| || || ||||||| || || |||||||||||||| Sbjct 929 ATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCAGTTGGCATAGG 988 Query 68823 TGCCACCAATAAACTATTTCTAAGACCATGTGTTATG-ATTTTATCTTTTAGATGTTTCC 68881 ||| | | |||| ||| || | ||||||| ||| | ||||| ||||| | | || Sbjct 989 TGCAAGTAGTAAAGAATTCCTTAAACCATGT-TTACGTATTTTGAGCTTTAGTTCATCCC 1047 Query 68882 AATCCCAAAGATCAGATGGTACAAC---ATTCCAAAGATCGTATTGTAGAATTCCGTTAC 68938 ||| ||| | | ||| |||||| | ||| |||||||||| || | || Sbjct 1048 AATTCCAGTACTTACTATCTACCTTTTTATTCCACATATCAAATTGTAGAATACCTTGAC 1107 Query 68939 TTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCA--GCTAGTTC-ACA-A 68994 | || || | ||| | |||||||||||| | ||| |||| ||| | | | Sbjct 1108 TAGCTGGACTACCCTGATAAGATTCATAAGGTCCATGAA--TCATTGCTAATTCCATAGA 1165 Query 68995 CTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTATTGAGATCTTGTGC 69053 | | ||||| ||| | || || || |||||||| || ||||| ||| | |||| || Sbjct 1166 CATT--TCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCT-ATTCAACTCTTTAGC 1222 Query 69054 TTCTAGACTA-TCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCC 69112 ||| | | | || | ||||| ||||| ||||| | |||||| || |||||||| | Sbjct 1223 TTC-ATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAACCCCTGAACAC 1281 Query 69113 CAATACCGATAGGTCTATGTCTCTTATTTGA-ACTTTCAGCTTCTGGAATAGGATAATAA 69171 | ||||| ||||||||||| ||||| || || ||||| |||||| |||||| |||||| Sbjct 1282 CTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTG-GCTTCTTTAATAGGGTAATAA 1340 Query 69172 TTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTT-TAGTTT 69230 || | || || ||||||| ||||||| | || || ||| | | | | || ||| Sbjct 1341 TTTCTTTCAATTATTTTATCTAGATTTCT-AGTAATAATTTTTGTAATTTCATATAATTT 1399 Query 69231 GAGAAAATCAAATCGTCCATCTATAACAA----ACATATTC----AGTGCTACAGATGCT 69282 ||||| |||| || | | | ||| ||| ||| | || | ||| || Sbjct 1400 TTTAAAATTAAAT--TCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCAATAGAAGCA 1457 Query 69283 AGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342 |||||||| || || || |||| || | ||| | || || || ||||| |||| Sbjct 1458 AGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACATAAATTA 1517 Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAA 69402 |||||||||||||| || ||||||| ||||| || ||||| | ||| || || Sbjct 1518 CTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGTCTTTATAT 1577 Query 69403 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTA 69462 | ||| | ||| ||| |||||||| ||| || | |||| ||| | | Sbjct 1578 AACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCATAAATCTTGT 1637 Query 69463 GCATTTATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTATATAGCCGTTCG 69519 || || ||| || || | | | || |||| |||||| | ||||| ||| Sbjct 1638 GC---TAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACATATAATTTTTCA 1694 Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 ||||| || ||||| ||| | ||| || ||||||||||||||||| || | ||| Sbjct 1695 AATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATTAAAGTCCAA 1754 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | || || || |||| |||||| || | || |||| ||||| ||| ||| | | Sbjct 1755 TTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCATAAAACAAA 1814 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699 ||||| | ||| |||||| || || ||||||| | | ||| | ||| || | ||| Sbjct 1815 TCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATTCGAATATA 1874 Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759 || |||||||||||||| | ||| | || | || || ||| |||||| ||| Sbjct 1875 TCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTCCTCCTTGA 1934 Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTA 69819 |||| ||||| || || | |||| | ||||| | ||| || | | ||||| || | Sbjct 1935 TCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCATTTGAAATT 1994 Query 69820 CCATTTGTTCCAGAAATATA--ACT----TCCTCTTGCGCGAATAT-TACTAATAGATAG 69872 ||||| || || |||||| | | ||||||| |||| | || | | || Sbjct 1995 CCATTCGTACCTCTAATATACGAATTTTGTCCTCTT------ATATCTTGTACT-GCTAC 2047 Query 69873 ACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACC 69932 |||||| || || || ||||| || |||||||| |||| | ||| || ||||||| Sbjct 2048 ACCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAATATACC 2107 Query 69933 CTCTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTA-TA 69990 ||||| ||| | |||| | ||| ||||||||| |||||||| | | || | Sbjct 2108 TTCTATTGAATCTGATTTCATAGATAA-AAGAAAACAAGACGACATTTG-GGGTCTAGGA 2165 Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || | |||||||||||| || | || |||||||| |||||| ||| | || || Sbjct 2166 GTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAATGA 2225 Query 70051 TATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || ||||| | ||| |||||||| || | ||| || ||||||| || | ||| || Sbjct 2226 TAAGTTTCTAATGCTTTATCTATATCATCAAT-ATGTATACCTATCGATACTCTCATTAA 2284 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 | ||| || |||| ||| | |||| || || || || | || ||| |||| | Sbjct 2285 TAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGATCTTTCTAA 2344 Query 70170 AGTTTTAAACCCAAAATA 70187 || ||||| |||||||| Sbjct 2345 TGTCTTAAATCCAAAATA 2362 >seq392 Length=30882 Score = 232 bits (256), Expect = 9e-56 Identities = 588/886 (66%), Gaps = 45/886 (5%) Strand=Plus/Minus Query 39304 TTCT-TGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAG 39362 |||| |||| ||| || ||| ||| || || || |||| | ||| ||||||||||| | Sbjct 27591 TTCTCTGTGCCATTACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTG 27532 Query 39363 TTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAttttt 39422 |||| |||| | ||||| ||||| ||| ||| ||||| ||| || | | || Sbjct 27531 TTTTTCCTTGAAGAGATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTT 27472 Query 39423 ttttAAATCCTAA---TTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCA 39479 || ||||||| |||| | ||||||||| || |||||||| |||||| | || Sbjct 27471 TTGAGCATCCTAAACATTCTAA---CAATCTATCAGCCACAAATTCAATGTATTGTGACA 27415 Query 39480 TCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTT 39539 | | | ||||||||||||| | | | |||| || || || ||| | || Sbjct 27414 TTAATCTTGAATTCATTCCTATCAAGTCACAAGGTAAAGATTCACATATAAATGATCGTT 27355 Query 39540 CGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATA 39599 | | ||||| || ||| ||| | || || || | || | | | ||| Sbjct 27354 CTACTTCTACTGCTTCTTTTA----CAATATT-----CTGAACAATTTCTTCTGGTAATT 27304 Query 39600 AATGTT---------TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTAC 39650 || || || | ||||| ||| ||||| ||||| || |||||||||| Sbjct 27303 TATTTTCCAGCAGACTATATATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTAC 27244 Query 39651 TAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATA 39710 |||||||||| ||| ||| || || ||| | | | | | ||||| | ||| || | Sbjct 27243 TAATTAATTCATTACTAAAAGTTAGCCCATGTAATTTATTTTGTTTTTTAAACCAGAAAA 27184 Query 39711 TGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCT 39770 | ||| |||| ||| ||| || || |||||||| |||| ||| || | | | Sbjct 27183 TAGCACAAAAACTACCACTAAACAATATACCTTCTACACATGCATTTGCTACTATCCGTT 27124 Query 39771 CTCCGTAAC---TTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTA 39827 || | || | |||| |||| ||||| || ||||| |||||| || || | Sbjct 27123 CTGCAAAAGAATTGGTATTATTA---ATCCATTTGGCAGCCCACAAAGCTTTATTTTTAA 27067 Query 39828 CACAAGGCATTGTTTCTATAGCATTAAAGAGAT--AATGT----TTTTCATCACTATCTT 39881 || || || ||||||| || | ||| | || ||| |||||||| ||| Sbjct 27066 CAGCTGGTATATTTTCTATTGCGTGAAATAAATTTAATCGCTCCTTTTCATC-----CTT 27012 Query 39882 TAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCT 39941 || ||| |||| || |||| ||| || |||||||||| || || || | || || | Sbjct 27011 TAT-ATAATTATCAATCAACAAACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTT 26953 Query 39942 GAAATCCGTAAAAACATCTT-GCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCC 40000 |||| ||||| |||| ||||| || ||||| || ||| ||||| | ||| Sbjct 26952 GAAAAGAATAAAATT-TCTTAGCTTCCGTTATTTGAACTTCTCTTAAAAATTTACTAGCC 26894 Query 40001 AAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAA 40060 |||||||| |||||||||||||| || ||||||||||| || |||||||| |||||| Sbjct 26893 AAATTTTCTAAAACTATTCCATCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAA 26834 Query 40061 TATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 40120 | |||||||| | ||||| | | || || | ||| |||||| ||||| ||| Sbjct 26833 TGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCT 26774 Query 40121 TCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATA 40166 || ||||||||||| || || ||||| ||||| || | || ||||| Sbjct 26773 TCTGCTGTCCAAAATGAAGCTTCTGCTTTTTTATAAAAGTCCCATA 26728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686900617198920