Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq761 205 7e-48 seq392 194 1e-44 seq306 118 8e-22 >seq761 Length=50680 Score = 205 bits (226), Expect = 7e-48 Identities = 415/612 (68%), Gaps = 23/612 (4%) Strand=Plus/Minus Query 19318 ATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGT 19377 || |||||||| || |||||||| ||| || | | ||||| ||||| ||| | Sbjct 42399 ATAAAACAATTAGGTATAAAACATGTGAAGGGAATTATATTATATGGACCACCAGGTACT 42340 Query 19378 GGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAA 19434 |||||||| || ||||| ||| | | | ||| ||| | | | ||||| ||| Sbjct 42339 GGAAAAACTTTGATTGCTAGACAGATAGGAAAAACGTTAAATGCTCGAGAACCT---AAA 42283 Query 19435 ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGA 19494 ||| | |||||||| ||||| ||||||||||||||||| ||||| ||||||||| | ||| Sbjct 42282 ATTATTAATGGTCCAGAAATATTAAATAAATATGTAGGACAATCTGAAGAAAATATTCGA 42223 Query 19495 CGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTG--- 19551 ||| ||| || |||||| |||| | |||| | | | ||| ||| ||| Sbjct 42222 AATTTATTTAAAGATGCTGAATTAGAATATAAAC---AAAGTGGAGAAAATTCGTTGTTA 42166 Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG---------TTCT 19602 || || |||||| |||||||| | || ||||| ||||| ||||| || ||| Sbjct 42165 CATATAATAATATTAGATGAAATAGATGCAATATGTAAACAAAGGGGGAATGCTTTTTCA 42106 Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 ||| | ||||| |||| | | | || ||||| | | || ||| | || ||||| Sbjct 42105 AGTGGTACAGGAGTCAATGATAGTATAGTTAATCAGTTATTATCTAAAATTGATGGTGTA 42046 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 || | |||||||||||| | ||||| ||||| |||||| | || ||||| || Sbjct 42045 AATAGTTTAAATAATATTTTATTAATTGGGATGACAAATAGAATTGATTTAATTGATGAA 41986 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACT-TACCCGATGAATG 19781 || |||||| |||| ||| |||| ||| || | || |||| || || |||| || | Sbjct 41985 GCTTTATTAAGACCAGGTAGGTTTGAATTACATATAGAAA-TATCTCTACCTAATAAGGA 41927 Query 19782 TGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAA 19841 || | || |||| || || || |||||| || ||| || | | ||| |||| Sbjct 41926 AGGTAGGGTTCAAATATTGAATATTCATACAAAAAATATGAGAAACAGTAATAAATTAAG 41867 Query 19842 TGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACT 19901 | |||||| || |||||||| | || | | ||| || | | || |||||| | Sbjct 41866 TCCCGATGTTAATATAGAAGAATTAGCCGAGAAAACCCCTAATTTTTCAGGAGCAGAAAT 41807 Query 19902 TGAGGGATTAGT 19913 ||| |||||||| Sbjct 41806 TGAAGGATTAGT 41795 >seq392 Length=30882 Score = 194 bits (214), Expect = 1e-44 Identities = 577/875 (66%), Gaps = 29/875 (3%) Strand=Plus/Plus Query 43711 TCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGAC 43770 ||||||| |||| ||| ||||| | | || ||||||||| | || ||||||||||| Sbjct 26708 TCCAATTTTGTATCCAGACGTATGGGACTTTTATAAAAAAGCAGAAGCTTCATTTTGGAC 26767 Query 43771 AGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA---TTAAAACCACA 43827 ||||||||| | ||||| | | || || | ||| ||| | ||||| | | Sbjct 26768 AGCAGAAGAGATAGATTTATCAAGCGATTTGAAAGATT---TTGAAAAATTAAATGAAAA 26824 Query 43828 AGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAA 43887 ||||||||||||||| || || || |||||||| || || || || ||||| Sbjct 26825 TGAAAAACATTTTATAAAACATGTGTTAGCATTTTTTGCAGCAAGTGATGGAATAGTTTT 26884 Query 43888 TGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGC-ACGATGTTTTT 43946 |||||||||| |||| ||| |||||||||| || | ||||| | || |||| Sbjct 26885 AGAAAATTTGGCTAGTAAATTTTTAAGAGAAGTTCAAATAACGGAAGCTAAGA-AATTTT 26943 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 || |||||||| || | || ||||||||||| |||| |||||| | |||| |||| Sbjct 26944 ATTCTTTTCAAATAGCAGTGGAGAATATTCATTCAGAAACTTACAGTTTGTTGATTGATA 27003 Query 44007 CGTACATCAAAGATGGGCACGAGAAGC-ATCGA--TTGTTTAATGCGATAGAAACAGTAC 44063 || || || |||| | || ||| || | || ||| | || ||||||| ||| Sbjct 27004 ATTATATAAAGGATG---AAAAGGAGCGATTAAATTTATTTCACGCAATAGAAAATATAC 27060 Query 44064 CTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTG 44123 | || ||||| ||||||| ||||| |||||||| ||| | ||||||||| Sbjct 27061 CAGCTGTTAAAAATAAAGCTTTGTGGGCTGCCAAATGGATTAATAATACCAATTCTTTTG 27120 Query 44124 GAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG- 44182 |||||| | || || |||| ||| ||||| || || ||| || | |||| | Sbjct 27121 CAGAACGGATAGTAGCAAATGCATGTGTAGAAGGTATATTGTTTAGTGG-TAGTTTTTGT 27179 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 || || || ||||| || |||| | | | | |||| | || ||| ||||| ||| Sbjct 27180 GCTATTTTCTGGTTTAAAAAACAAAATAAATTACATGGGCTAACTTTTAGTAATGAATTA 27239 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGA 44302 || ||| | |||||||| |||||| || ||| || || || | | ||| Sbjct 27240 ATTAGTAGAGATGAAGGATTACATACAGACTTTAACTGTTTAATATATAG---TCTGCTG 27296 Query 44303 GACGATAAGCCTTCATGTAAGACAAT-TACAG-ATATTGTTGTAGAGGCAGTAAAGATAG 44360 || |||| || |||| | | | ||| ||||||| ||| |||||| | ||| Sbjct 27297 GAAAATAA--ATTACCAGAAGAAATTGTTCAGAATATTGTAAAAGAAGCAGTAGAAGTAG 27354 Query 44361 AACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGA 44420 ||| | |||||| | | |||||| | || |||||||||||| | || | Sbjct 27355 AACGATCATTTATATGTGAATCTTTACCTTGTGACTTGATAGGAATGAATTCAAGATTAA 27414 Query 44421 TGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA---CTGGGTTGCGATA 44477 || ||||| ||||||| | || ||| | | | || ||| | || ||| | Sbjct 27415 TGTCACAATACATTGAATTTGTGGCTGATAG---ATTGTTAGAATGTTTAGGATGCTCAA 27471 Query 44478 AACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAA 44537 || || | | | |||| || ||| ||| ||||| || || | |||| |||| Sbjct 27472 AAGTCTTTTATTCAAAAAATCCTTTTAATTGGATGGATTTGATATCTCTTCAAGGAAAAA 27531 Query 44538 CAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 |||| ||||| |||||| | |||| || |||||| Sbjct 27532 CAAATTTTTTCGAAAAAAGAGTTGCCGATTATCAG 27566 >seq306 Length=50732 Score = 118 bits (130), Expect = 8e-22 Identities = 263/395 (67%), Gaps = 0/395 (0%) Strand=Plus/Minus Query 40875 GGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCT 40934 || ||| | ||||| ||||| | | | ||||| || || ||||| | |||| | | Sbjct 47704 GGACCTATATATGGTTTTCAATGGAGGCATTTCGGTGCTGAATATACAAATATGCATGCC 47645 Query 40935 GATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGAT 40994 | ||| |||||||| | ||||||||| | |||| || || ||| ||| Sbjct 47644 AACTATGAAGATAAAGGAGTTGATCAATTAAAAAATATTATCCATTTAATAAAAAATGAT 47585 Query 40995 CCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCA 41054 || ||| || | || || ||||| || ||||| | || | || |||||| Sbjct 47584 CCAACTAGTAGAAGAATTATTTTGTGTGCATGGAATGTTAAAGATCTTGATCAAATGGCA 47525 Query 41055 TTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAA 41114 | || ||||||||| | ||||| || ||||| |||| |||| || | |||||| Sbjct 47524 CTACCTCCTTGTCATATTTTATGCCAATTTTATGTTTTTGATGGAAAATTATCATGTATT 47465 Query 41115 TTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCT 41174 |||||||||| ||| |||| | || |||| ||||| ||||| || || ||| | Sbjct 47464 ATGTATCAAAGGTCATGTGATTTAGGTTTAGGAGTCCCTTTTAATATTGCCTCCTATTCA 47405 Query 41175 CTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACG 41234 | |||| ||||||||||||| || |||||| | |||| | || | || | Sbjct 47404 ATATTCACTCATATGATTGCACAAGTGTGTAATTTACAGCCTGCACAGTTCATACATATT 47345 Query 41235 TTAGGAGATGGACATATTTACATTAATCACATAGA 41269 |||||| ||| |||| |||| | |||||| || || Sbjct 47344 TTAGGAAATGCACATGTTTATAATAATCATATTGA 47310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451383672765