Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq27 152 4e-32 seq60 95.1 1e-14 >seq27 Length=5678 Score = 152 bits (168), Expect = 4e-32 Identities = 800/1254 (64%), Gaps = 56/1254 (4%) Strand=Plus/Plus Query 130556 TGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCC 130615 || || |||||| | |||| || ||||||||||||| ||| | || | ||| || ||| Sbjct 678 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 737 Query 130616 CAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTA 130675 || | || ||||| || ||| | | | |||||||| || | || || || Sbjct 738 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTATTTCACTTATATACTGGACACTT 797 Query 130676 CCGTTGTTGGCTAT-AATTTC-GTTGCGCATACTTTTATCGTACAATCCAAGCTGTACAA 130733 || || | || || || | | ||| | ||| || || | || || | | | Sbjct 798 CCATTATGCGCAATTAACTGCTGTTTC--ATATCTTCGTCCCATAAGCCCCTATCGAATA 855 Query 130734 GATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGT 130793 ||||||||| ||||||| |||| || ||| || ||| || || | |||| | Sbjct 856 GATCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAAT 915 Query 130794 AAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTG 130853 ||||||| || || | ||||||||||||||||| || || | |||||| | ||||| | Sbjct 916 AAATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAG 975 Query 130854 CGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGT-CGTGATTTTTCGC 130912 | || ||||| ||| | || || |||||| | | ||| || | ||| ||||| || Sbjct 976 CAGTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGT-ATTTTGAGC 1034 Query 130913 TTCAATTCATCCCAATCCCA----TAGAGAGGTAGGTTTGACATTGTTCCACATATCAAA 130968 || | ||||||||||| ||| | | || ||| || |||||||||||||| Sbjct 1035 TTTAGTTCATCCCAATTCCAGTACTTACTATCTACCTTT----TTATTCCACATATCAAA 1090 Query 130969 TTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACG 131028 |||||| || |||| ||| || ||||| | | ||||| || ||| | | Sbjct 1091 TTGTAGAATACCTTGACTAGCTGGACTACCCTGATAAGATTCATAAGGTCCATGAATCAT 1150 Query 131029 AGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATT 131088 || | || | ||| ||||| | || || ||||||||| ||| | |||| Sbjct 1151 TGCTAATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCTATT 1210 Query 131089 TAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAG 131148 || | ||| |||| | ||| || ||| || ||| | ||||||| ||||| | Sbjct 1211 CAACTCTTTAGCTTCATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAA 1270 Query 131149 ACCCTGTATCCCAACGCCCACCGGTCTATG--TTTTAAATTACATTTACGCGAACATTCG 131206 ||||| | || | || | |||||||| | || ||| || || || Sbjct 1271 CCCCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGC--TTCTTTA 1328 Query 131207 GTGGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACG 131266 | || ||| || | ||||||||||| | || ||| | | ||||| ||| | Sbjct 1329 ATAGGGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAA-- 1386 Query 131267 CTTTTC----AATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTAC 131322 |||| ||||| | |||| ||| |||| | || ||||||| || Sbjct 1387 --TTTCATATAATTTTTTAAAATTAAATTCTTTTTTTTCCAAGTCCACAAATTTGCATAA 1444 Query 131323 ACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTC 131382 | || || || |||||||| || || ||| ||| ||||| || |||||| Sbjct 1445 AGCAATAGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTC 1504 Query 131383 GGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCAC 131442 || |||||||| | || || || || | ||||| |||||| ||||||||| || Sbjct 1505 ACAACATAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATT-AC 1563 Query 131443 ATG-GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATC 131501 ||| ||| || || | ||| || || || ||||| | |||| ||| |||| || | Sbjct 1564 ATGAGTCTTTATATAACATATATGGAACACCTGTTTCAATTTGACTTT--GTAATATAGC 1621 Query 131502 GAA--AGAGTTTTCGAGC--AGACAATTGATATTTG----TATTGGCCGCGTTTTTCGTA 131553 || | | | | | || | ||| || | |||| |||| | || ||| || Sbjct 1622 AAACCATAAATCTTGTGCTAATACAGTT--TTTTTGCCCATATTTTC----TTCTTCATA 1675 Query 131554 ATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACG---AACT--GTCCAAATTGGGACAT 131608 || | || || ||||||| | || || | | ||| |||| |||| ||| Sbjct 1676 CTTAACATATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCC----TGGG-CAT 1730 Query 131609 TCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCC 131668 || | |||||||||| | ||| || | || |||| ||||| ||||| || Sbjct 1731 TCATTTGGACACATTAAAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCA 1790 Query 131669 GGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttt 131728 || ||||| | || || |||| |||||| ||| || |||||| | |||| |||||| Sbjct 1791 GGAACCCAAACAGCATAAAACAAATCTCTTGCTCTTAATTCTTCT-TTGCCATGATTTTT 1849 Query 131729 t-tCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | | |||| |||||| || || || || | |||||| ||||| | ||| || || Sbjct 1850 TCTTAAATCTAAAAATTCGAATATATCTGAATGCCATGGTTCAATATAAACAGC 1903 >seq60 Length=41302 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 |||||| || || ||||| || ||||||||||||||||| | | | ||| | | |||| Sbjct 6143 TACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTT-CTTCCATCTT 6085 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | |||||||| || || |||| || | ||||| || || || | ||||| ||||| Sbjct 6084 CTAGCTGTTTTCCTGCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTT 6025 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 || || || | | || | |||||| | | ||| || || || || || | || Sbjct 6024 GAATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTT 5965 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| |||||||| || || |||||||| Sbjct 5964 TTCCCGTTAGAGTTTTTACGAAAATTTGCAT 5934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424929464519736