Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq124 120 2e-22 seq60 84.2 1e-11 >seq124 Length=28153 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || || || || | |||| ||| ||||||||||| || ||||| | ||||| | ||| Sbjct 11552 AAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCTGATAATGTTCTACCATCT 11611 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | |||||| || ||||||||||| | |||||| || || || | ||| ||||||||| Sbjct 11612 TCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTCT 11671 Query 34615 GTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 ||| ||||| ||||| | ||| || ||| ||| || || | ||||| || Sbjct 11672 -TGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGTGTTATTGT 11730 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || ||||| ||||| ||||| || ||||| Sbjct 11731 TTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||| ||||||||||| ||||| || | ||||| | ||||| | |||||| || ||||| Sbjct 11344 CTCTTTTTGAATGTTGTAATCCGACAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAA 11403 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 |||||| | |||||| || || || | ||| ||||||||| || ||| | ||||| Sbjct 11404 TATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTCT-TGTATTTTAGCCTTAACAT 11462 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| || ||| ||| || || | ||||| ||||| || ||||| ||||| | Sbjct 11463 TCTCAATGGTATCTGATGGCTCAACATCAAGAGTTATTGTTTTTCCTGTTAATGTTTTTA 11522 Query 34694 CAAAAATCTGCAT 34706 |||| || ||||| Sbjct 11523 CAAAGATTTGCAT 11535 Score = 93.3 bits (102), Expect = 3e-14 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || || || || | |||| ||| ||||||||||| ||||| || | ||||| | ||| Sbjct 11780 AAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCCGACAATGTTCTTCCATCT 11839 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | |||||| || ||||||||||| | |||||| || || || | ||| ||||| ||| Sbjct 11840 TCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATCT 11899 Query 34615 GTGATCTTTTGTTTTAAC 34632 ||| ||||| ||||| Sbjct 11900 -TGAATTTTTGCCTTAAC 11916 >seq60 Length=41302 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || | ||| |||||||||||| || || || || | |||| | ||||| Sbjct 6142 ACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCT 6083 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || ||||| || ||||| |||| | |||||||| || || | ||||||||| ||| || Sbjct 6082 AGCTGTTTTCCTGCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCT-TG 6024 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||||| || || | ||| ||||| || || || | || || ||||| Sbjct 6023 AATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTT 5964 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || |||| ||||| || ||||| ||||| || Sbjct 5963 TCCCGTTAGAGTTTTTACGAAAATTTGCATTTT 5931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314725944514049