Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq124 143 2e-29 seq60 127 2e-24 >seq124 Length=28153 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| | || || || | || |||||||| || || || || Sbjct 11535 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACTCTTGATGTTGAGCCATCA 11476 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||||| |||||||| ||||| || ||||| |||||| Sbjct 11475 GATACCATTGAGAATGTTAAGGCTAAAATACAAGACAAGGAAGGAATTCCACCTGATCAA 11416 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | ||||||| || || |||||||| ||||| | || | || ||||||||| Sbjct 11415 CAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTGTCGGATTACAAC 11356 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 |||||||| ||||| ||| |||| || ||||| Sbjct 11355 ATTCAAAAAGAGTCAACCCTACACTTAGTTTT 11324 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| | || || || | || || ||||| || || || || Sbjct 11763 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACACTTGATGTTGAGCCATCA 11704 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||||||||||||||| ||||| || ||||| |||||| Sbjct 11703 GATACCATTGAGAATGTTAAGGCAAAAATTCAAGACAAGGAAGGAATTCCACCTGATCAA 11644 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | ||||||| || || |||||||| ||||| || || | || || |||||| Sbjct 11643 CAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGTAGAACATTATCAGACTACAAC 11584 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 |||||||| ||||| || ||||| || || || Sbjct 11583 ATTCAAAAAGAGTCCACTTTACACTTAGTCTT 11552 Score = 132 bits (146), Expect = 4e-26 Identities = 136/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 27022 CTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAG 27081 |||| |||||||| || ||||| || || | ||||||| || || ||||||||||| Sbjct 11957 CTATAACTCTTGATGTTGAACCATCGGATACTATTGAGAATGTTAAGGCAAAAATTCAAG 11898 Query 27082 ACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAG 27141 | || ||||| || ||||| ||||||||| | ||||||| || || |||||||| |||| Sbjct 11897 ATAAGGAAGGAATTCCACCTGATCAACAGAGATTAATATTTGCGGGAAAACAATTAGAAG 11838 Query 27142 ACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 | | || | || ||||||||||||||||| ||||| || ||||| || || || Sbjct 11837 ATGGAAGAACATTGTCGGATTACAACATTCAAAAAGAGTCCACTTTACACTTAGTCTT 11780 >seq60 Length=41302 Score = 127 bits (140), Expect = 2e-24 Identities = 165/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 26971 TTTTTAATTTATACGCCA-TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACT 27029 |||||| |||||| | |||| || || ||||||||||| || || || | ||||| Sbjct 5916 TTTTTACCTTATACAAAAATGCAAATTTTCGTAAAAACTCTAACGGGAAAAACCATTACG 5975 Query 27030 CTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAA 27089 ||||| || ||||| || ||| | ||||||| || || |||||||||||| || || Sbjct 5976 CTTGATGTCGAACCATCTGACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAG 6035 Query 27090 GGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG 27149 || || ||||| || ||||| | |||| | || || ||||| | ||||| | Sbjct 6036 GGAATTCCACCAGACCAACAAAGACTAATTTTTGCAGGAAAACAGCTAGAAGATGGAAGA 6095 Query 27150 ACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||| | || || ||||| |||||||||||||| || || || ||||| Sbjct 6096 ACCTTATCTGACTACAATATTCAAAAGGAGTCTACTTTGCACTTGGT 6142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913219034560