Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_028749.1 Length=134270 Score E Sequences producing significant alignments: (Bits) Value seq183 104 2e-17 >seq183 Length=22570 Score = 104 bits (114), Expect = 2e-17 Identities = 392/601 (65%), Gaps = 22/601 (4%) Strand=Plus/Plus Query 96447 AATCCATTTAATACAATGGGGTTAAT---TTTCTCTTC--CTTGTAATAAGTCTCTCTA- 96500 || ||||| || | || |||||||| ||||||| | || | || || | |||| Sbjct 16653 AAACCATTGAAAATCATAGGGTTAATGTCTTTCTCTCCTACTGGGTATTTGT-TGTCTAG 16711 Query 96501 -CCTAAATTCATAAGAGCCTTATTGGCATTGTATTTAAGGAACGATTTAAC---TTC-GT 96555 |||||||| |||||| || || ||||| |||| | |||| ||| || ||| || Sbjct 16712 TCCTAAATTTTGAAGAGCTTTGTTTGCATTATATTGCAAGAACACTTTTACCTGTTCAGT 16771 Query 96556 TATCAAGATTAATTCCAGAGTAAATTTCCTGTGTATAACCAATCTCGTTATCCATTAACT 96615 |||| |||||| | ||||||| | |||||| | ||||| ||||||||||| | Sbjct 16772 TATC----TTAATTGGATCATAAATTTTTTTTGTATACTCCATCTCATTATCCATTAATT 16827 Query 96616 CATCGAGCAAACGATAAACAAGATTATCTACCTCTTCTTTCTCTTCCTCTGATA-GCTCA 96674 || | ||||||| || || | | | || | ||| || | | | | Sbjct 16828 TGTCTAATAAACGATCCACTTCTTTCTTCAGATGAGATTGTTTTTCAGACGAAAAGGTAA 16887 Query 96675 GAATAAATTTCTTGTCCAAGCAAACCACCAAATAGTCCATGCACACTTTCATCACGAATG 96734 || |||| || | ||| | | | || |||||||| | | |||||| | ||| Sbjct 16888 TAAATAATTGATTAGCTAAGGTACCTATGTAA-AGTCCATGTATAGCTTCATCTCTAATT 16946 Query 96735 ATTAAGTTAATAATTTCACCACTTGCAACCATCTTCCCTTGACCAGCCAAATACAGAGGG 96794 ||||| ||||| || || || || |||||| |||||| | | ||| | | Sbjct 16947 ATTAAATTAATTATCTCTCCGCTGTTAACCATTAGGCCTTGAGAGGATAGATATAATAGA 17006 Query 96795 TAAAAGAAACCACTATAAAATAGGAACGACTCTAAGAACACAGAGGCTACAATTGCCATA 96854 || || || ||| ||||| || ||||| ||||| || || ||||| || |||| | Sbjct 17007 TAGAAAAATCCAGAGTAAAAAAGAAACGATTCTAAAAATACTGAGGCAGTCATAGCCAAA 17066 Query 96855 TATAAGTCTTTCTTTGTTTC-AATGTTGCGGTAATATTTGTCAATGATAGACACTTTCTT 96913 || |||| |||||| || ||||| | || |||| | |||| || | || ||| || Sbjct 17067 TA-AAGTGATTCTTTACTTGTAATGTCGTTATAGTATTCGGCAATCATTGTCATTTTTTT 17125 Query 96914 TTGTAGATATTTATTCTCAGCGACC-CAATCAAATACATCGTCGATTTCTTCCTTTGTGG 96972 ||| | || | |||||| | | || ||||| || | || |||||||| | || Sbjct 17126 TTGCA-ATGTGGATTCTCCTTTAACTCATTCAAACACCTGGTTTATTTCTTCTGTACTGA 17184 Query 96973 CTAATGTTGTAAAAATTGTACTATAAGATTTTGCATGGATGCCTTCCATCATTCCCATAA 97032 ||| || || |||| | || ||||||||| || ||||||||||||||||| Sbjct 17185 GTAAGGTACAGAAGATTGAAGAGTAGCTTTTTGCATGCATTTGTTCCATCATTCCCATAA 17244 Query 97033 A 97033 | Sbjct 17245 A 17245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429534211036423