Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq183 138 9e-28 >seq183 Length=22570 Score = 138 bits (152), Expect = 9e-28 Identities = 315/464 (68%), Gaps = 24/464 (5%) Strand=Plus/Minus Query 87431 CATTTTGATTTCACCAAGCTCATTTAAAGCATGGTTTTTGTTTGCGTTATCTTTATACAT 87490 |||||||||| || | | || |||| || ||||| || || ||||| || | || Sbjct 19265 CATTTTGATTCTCCCTACTCCCTTCAAAGGATTATTTTTATTAGCATTATCAATAAATAT 19206 Query 87491 GATATAAGGATAACCAGATTGTAATTGAATTTGAGCGATCAGATTTAACATTTCTCTAGC 87550 | |||||||||||||||| ||||||||||| || ||| | | ||| |||||| Sbjct 19205 TACGTAAGGATAACCAGATTCAAATTGAATTTGCGCTATCTTGGTAAGAATTAATCTAGC 19146 Query 87551 A-TTAATTTTATGTTTGATAACATTTTCATTCTCAACGAACTTGTCATACCAATCATTAA 87609 | ||||| | | ||| | || |||| ||| || | || |||||||| || ||||| | Sbjct 19145 AGATAATTCT-TTTTTCAAAATATTTGGATTGACAGCTAATTTGTCATATCATTCATTCA 19087 Query 87610 TAT-TAATGTCATCTAAGATTACATCTTTACCGAATTCTTCTTGAATTGAGTAT--GGTT 87666 ||| ||| |||| | | | || || |||||| ||| ||||| |||| Sbjct 19086 TATCTAA----ATCTGACAAAAATACT---CCATATTCTTGAAAAAT--AGTATTAGGTT 19036 Query 87667 CAAACATATATAAGTCTTTGTCTTCTTTTGCTAAATCAAAGAATAATGAAGGAACAATTA 87726 |||| ||| | |||| ||| | ||| || ||||| | ||| || ||||| |||| Sbjct 19035 CAAATATAAAAAAGTTTTTATTTTCCTTAGCTAATTGAAAAAACTTGTCGGGAACTATTA 18976 Query 87727 AACCGATTGAAAGTGTAGCTAAA--CGTGTATCTTCATCTGCATTAACTTTCTTAGTGTT 87784 | || || ||||| || || || | || | |||||||||||||| ||| ||| | Sbjct 18975 ATCCAATAGAAAGGGT--CTGAATTCTTGACTTTTCATCTGCATTAATTTTTTTACAATC 18918 Query 87785 TAATAACTCAATTACATCTGAGTGGAAAATGTTTAAGTAAGCAGCACCAGCTCCAGCACG 87844 | || || | | ||| |||| |||||||| || || || |||||| | | | | Sbjct 18917 GATAAAGTCTACCAAATCATAGTGAAAAATGTTCAAATATGCCGCACCA---CTACCTCT 18861 Query 87845 TTGA---CCTAATTGATCAGCATAACTAACTTCACCTTCAATTA 87885 | || ||||||||||||||||| || | || |||||| || Sbjct 18860 TCGAACTCCTAATTGATCAGCATAGTCAAATACATCTTCAAGTA 18817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408593654257271