Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq60 87.8 1e-12 >seq60 Length=41302 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--A 27844 |||||||||||||| || |||||||| || || ||| ||||| ||||||||||| | Sbjct 5931 AAAATGCAAATTTTCGTAAAAACTCTAACGGGAAAAACCATTACGCTTGATGTCGAACCA 5990 Query 27845 GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || || | ||| || || |||||| || || || || |||| | Sbjct 5991 TCTGACACTATTGAGAAT--GTAAAGGCAAAAATTCAAGATAAGGAGGGAATTCCACCAG 6048 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | |||||||||| |||||||| | || || | | | | ||| || || | Sbjct 6049 ACCAACAAAGACTAATTTTTGCAGGAAAACAGCTAGAAGATGGAAGAACCTTATCTGACT 6108 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||| || ||||| ||| |||||||| ||||| Sbjct 6109 ACAATATTCAAAAGGAGTCTACTTTGCACTTGGT 6142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355858266769431