Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq60 134 3e-26 seq124 123 6e-23 seq415 86.0 1e-11 >seq60 Length=41302 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| | ||| ||||| ||||| || || || || | | ||| ||||||||||| ||||| Sbjct 6137 GTGCAAAGTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCTAGCTG 6078 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || ||||| || || || | ||||||||| || |||| ||| ||||| || || || || Sbjct 6077 TTTTCCTGCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTGAATTTT 6018 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | || || || || || |||||||| ||| || || || || || || |||||||| Sbjct 6017 TGCCTTTACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTTTCCCGT 5958 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| || | |||||||| Sbjct 5957 TAGAGTTTTTACGAAAATTTGCATTTT 5931 >seq124 Length=28153 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | ||| || || ||||||||||| ||||| ||||||| | || ||||| Sbjct 11320 TCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGACAATGTTCTTCC 11379 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || ||||| || || | | ||||| ||||| |||| ||||||||| Sbjct 11380 ATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTT 11439 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || || || || || || || ||||| || || ||||| || ||||| || Sbjct 11440 GTCTTGTATTTTAGCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGAGTTAT 11499 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || | || |||||||| | ||||| Sbjct 11500 TGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11535 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||| | ||||||||||||||| ||||| || || | | || || || Sbjct 11548 TCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCTGATAATGTTCTACC 11607 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || ||||| || || | | ||||| ||||| |||| ||||||||| Sbjct 11608 ATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTT 11667 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || || ||| || || || || ||||| || || ||||| || || || || Sbjct 11668 GTCTTGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGTGTTAT 11727 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || | || |||||||| | ||||| Sbjct 11728 TGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||| | ||||||||||||||| ||||| ||||||| | || ||||| Sbjct 11776 TCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCCGACAATGTTCTTCC 11835 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || || || | | ||||| ||||| |||| ||||||||| Sbjct 11836 ATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTT 11895 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || ||| || || || || || || || || |||||| || ||||| || Sbjct 11896 ATCTTGAATTTTTGCCTTAACATTCTCAATAGTATCCGATGGTTCAACATCAAGAGTTAT 11955 Query 211079 CGTCTTTCC 211087 || ||||| Sbjct 11956 AGTTTTTCC 11964 >seq415 Length=53935 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/208 (70%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 114617 GCATTTCTTTTGGATACTGACCCAGAAGAAAGGAAAAGAGGAAAAACTGTGGAGTTTGCC 114676 |||||| || |||||| | | |||||| || ||| |||||||||||| || | | Sbjct 6143 GCATTTATTATGGATATTAATGAAGAAGAGAGACAAAAAGGAAAAACTGTAGAAGTAGGA 6084 Query 114677 CGCGAGCCGTTTGTTTGGAACAA----CAGAAACTTTACAATCTTGGATGCACCGGGTCA 114732 | ||| || ||| ||||| ||||| |||||||| | ||||| ||||| || Sbjct 6083 AG--AGCACATT--TTGAAACAAAGGACAGAAGATTTACAATTCTTGATGCTCCGGGACA 6028 Query 114733 TCGAAATTTCATTCCCAATGCCATCGAGGGACTTGCGAACGCTGACGTTTGTGTTCTTGT 114792 | |||||| ||||| ||| || || ||| | ||||| ||| ||||| | | Sbjct 6027 TAAAAATTTTATTCCAAATATGATTAGTGGTGCTGCTCAAGCTGATGTTGGTGTTTTAAT 5968 Query 114793 CGTTTCGGCGAGAAAGGGAGAATTTGAA 114820 ||||| || ||||||||||||||||| Sbjct 5967 TGTTTCCGCACGAAAGGGAGAATTTGAA 5940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159137846391845