Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq124 143 2e-29 seq60 113 3e-20 >seq124 Length=28153 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || |||||||| || || || || ||||| | | Sbjct 11763 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACACTTGATGTTGAGCCATCA 11704 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| |||||| || ||||| ||||| | || || ||||| Sbjct 11703 GATACCATTGAGAATGTTAAGGCAAAAA-TTCAAGACAAGGAAGGAATTCCACCTGATCA 11645 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | ||||||||||| || |||||| | ||||| | | || ||| || ||||| Sbjct 11644 ACAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGTAGAACATTATCAGACTACAA 11585 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||||||||| ||||| ||||| ||||| || ||||||| Sbjct 11584 CATTCAAAAAGAGTCCACTTTACACTTAGTCTTAAGATTAAGAGGAGG 11537 Score = 143 bits (158), Expect = 2e-29 Identities = 154/201 (77%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAA 23696 |||||||| || ||||| || ||||| | |||| ||| |||| ||| |||| ||||| Sbjct 11964 GGAAAAACTATAACTCTTGATGTTGAACCATCGGATACTATTGAGAATGTTAAGGCAAAA 11905 Query 23697 AATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACA 23756 | || || || ||||| | || || ||||||||| | ||||||||||| || ||||| Sbjct 11904 A-TTCAAGATAAGGAAGGAATTCCACCTGATCAACAGAGATTAATATTTGCGGGAAAACA 11846 Query 23757 ACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTT 23816 | | ||||| | | | || || ||||||||||| |||||||||||||| ||||| || Sbjct 11845 ATTAGAAGATGGAAGAACATTGTCGGATTACAACATTCAAAAAGAGTCCACTTTACACTT 11786 Query 23817 AGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || ||||||| Sbjct 11785 AGTCTTAAGATTAAGAGGAGG 11765 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || |||||||| || ||||| || ||||| | | Sbjct 11535 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACTCTTGATGTTGAGCCATCA 11476 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | |||| | ||||| ||||| | || || ||||| Sbjct 11475 GATACCATTGAGAATGTTAAGGCTAAAA-TACAAGACAAGGAAGGAATTCCACCTGATCA 11417 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | ||||||||||| || |||||| | ||||| | | | || || |||||||| Sbjct 11416 ACAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTGTCGGATTACAA 11357 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||||||||| || |||| ||||||||||| || |||| || Sbjct 11356 CATTCAAAAAGAGTCAACCCTACACTTAGTTTTAAGATTAAGAGGTGG 11309 >seq60 Length=41302 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| |||||||| ||||| || ||||||||||| || || || || || || | Sbjct 5931 AAAATGCAAATTTTCGTAAAAACTCTAACGGGAAAAACCATTACGCTTGATGTCGAACCA 5990 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||| | |||| ||||||| || || || || | || ||||| Sbjct 5991 TCTGACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAGGGAATTCCACCAGAC 6050 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| | |||| ||||| || ||||| || ||||| | | | || ||| || ||| Sbjct 6051 CAACAAAGACTAATTTTTGCAGGAAAACAGCTAGAAGATGGAAGAACCTTATCTGACTAC 6110 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||| ||||| || || || || || Sbjct 6111 AATATTCAAAAGGAGTCTACTTTGCACTTGGT 6142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005674124124