Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq60 143 6e-29 seq124 120 7e-22 seq160 95.1 3e-14 >seq60 Length=41302 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | ||| || || ||||| | |||||| || | || ||||| |||||||||||||| Sbjct 6137 GTGCAAAGTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCTAGCTG 6078 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || || || || || |||| ||||||||| || ||||| || ||||| ||||| || || Sbjct 6077 TTTTCCTGCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTGAATTTT 6018 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | ||| ||| || || ||||| || | ||| || || | ||| || || || ||||| Sbjct 6017 TGCCTTTACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTTTCCCGT 5958 Query 225690 CAAAGTTTTTATGAACACTTGCATTTT 225716 | |||||||| ||| | ||||||||| Sbjct 5957 TAGAGTTTTTACGAAAATTTGCATTTT 5931 >seq124 Length=28153 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | ||| | |||||| |||||||| | ||||| || | || ||||| || Sbjct 11548 TCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCTGATAATGTTCTACC 11607 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| || || || || || || | || ||||| || || ||||| |||||||| Sbjct 11608 ATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTT 11667 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| || ||| ||| ||| || ||||| ||||| | || || || | || || Sbjct 11668 GTCTTGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGTGTTAT 11727 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || ||||||| || | |||||| Sbjct 11728 TGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Score = 116 bits (128), Expect = 9e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || || |||||||| | |||||||| | ||| ||||| |||||||||| || Sbjct 11332 GTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGACAATGTTCTTCCATCTTCTAATTG 11391 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || || || || || | || ||||| || || ||||| |||||||||||||| || || Sbjct 11392 TTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGTATTTT 11451 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| || ||||| ||||| | || || || | || || || || || || Sbjct 11452 AGCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGAGTTATTGTTTTTCCTGT 11511 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || ||||||| || | |||||| Sbjct 11512 TAATGTTTTTACAAAGATTTGCAT 11535 >seq160 Length=71889 Score = 95.1 bits (104), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 ||||| ||||| ||||||| ||| | |||| |||||||||||||| |||||||| ||| Sbjct 10378 GCCCCTTACACTGGTTGTGCTATGGCTGAATTCTTTAGAGATAATGGAAAACATGCATTA 10319 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 ||||| | || ||||||||||||||| Sbjct 10318 ATCATATTTGACGATTTAAGTAAACAA 10292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192516638821382