Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq27 389 6e-103 seq392 192 8e-44 >seq27 Length=5678 Score = 389 bits (430), Expect = 6e-103 Identities = 1127/1707 (66%), Gaps = 56/1707 (3%) Strand=Plus/Plus Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 || ||||| ||| |||| | ||| || ||||| | |||||| ||||||| |||||| Sbjct 678 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 737 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGAT---TTGTATTTTGAATGGAT 75634 || | |||||| | | || || | ||||| || | | || ||| || | | Sbjct 738 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTATTTCACTTATATACTGGACACTT 797 Query 75635 CCGCCATCAGATAT-AATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA 75693 || || | || || || | || || || || | ||| || || ||| || Sbjct 798 CCATTATGCGCAATTAACTGCTGT-TTCATATCTTCGTCCCATAAGCCCCTATCGAATAG 856 Query 75694 AACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTA 75753 | || | | | |||||| ||||| | |||||||||| ||| ||||||| | || Sbjct 857 ATCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATA 916 Query 75754 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 75813 ||| ||||| ||||| ||||| | ||||| || || || | ||||||| || ||||| Sbjct 917 AATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGC 976 Query 75814 AGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 75873 ||| ||||||||||| | | |||| ||| || | ||||||| | | ||||| || Sbjct 977 AGTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTT 1036 Query 75874 TAGATATTTCCAATCCCAAAGATCTGATGGTACAAC-----ATCCCAGAGATCGTATTGT 75928 ||| | | ||||| ||| | || | | | | || ||| | ||| ||||| Sbjct 1037 TAGTTCATCCCAATTCCA--GTACTTACTATCTACCTTTTTATTCCACATATCAAATTGT 1094 Query 75929 AGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTT--TCA- 75985 ||||| || | ||||| || | ||| | ||| |||| |||| | ||| Sbjct 1095 AGAATACCTTGACTAGCTGGACTACCCTGATAAGATTCATAAG----GTCCATGAATCAT 1150 Query 75986 -GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTAT 76043 |||| ||| | | ||||| ||| | || || || |||||||| || ||||| || Sbjct 1151 TGCTAATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCT-AT 1209 Query 76044 TAAGATCTTGCGCTTCAA--GACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGC 76101 | | |||| |||||| |||| || | ||||| ||||| ||||| | |||||| Sbjct 1210 TCAACTCTTTAGCTTCATCCGACT--CATAGGGATATCTCAAAAGCATAAAAGTATCTGC 1267 Query 76102 TAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGG 76161 || |||||||| || ||||| ||||||||||| ||||| || || | || |||||| Sbjct 1268 TAACCCCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTT 1327 Query 76162 AATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCAC 76221 ||||||||||||||| | || || ||||||| |||||||| || | ||| | Sbjct 1328 AATAGGGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAAT 1387 Query 76222 GTCCTTTAGTTTGAGAAAATCAAA-------TTTTCCATCTATCACAAACATATTAAGAG 76274 || | || ||| ||||| ||| ||||||| | |||||| | | || Sbjct 1388 TTCATATAATTTTTTAAAATTAAATTCTTTTTTTTCCAAGT-CCACAAATTTGCATAAAG 1446 Query 76275 CTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCG 76334 | ||||| || |||||||| || || || |||| || | ||| | || || || Sbjct 1447 CAATAGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCAC 1506 Query 76335 TGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATG 76394 |||| ||||||||| |||||||| || ||||||| ||| || || ||||||| Sbjct 1507 AACATAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATG 1566 Query 76395 AGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCC 76454 |||| ||||| | | | | ||| || |||||||| || || | |||| || Sbjct 1567 AGTCTTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACC 1626 Query 76455 AGACGACTCTAGCTTTTATTATAGATTTGTATCGC---TTCTCTCTTTCATATTGTGTAT 76511 | | | ||| | | || || || ||| | | | || ||| |||||| | || Sbjct 1627 ATA--AATCTTG-TGCTAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACAT 1683 Query 76512 ATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACA 76571 |||| ||||||||| || ||||| ||| | || || |||||||| ||||||| Sbjct 1684 ATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACA 1743 Query 76572 TCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAG 76631 | || | ||| | || ||| || || | |||||| || | ||||| | ||| | || Sbjct 1744 TTAAAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAG 1803 Query 76632 CAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGA 76691 || ||| | ||||| | ||| |||||| || || ||| ||| | | ||||| | Sbjct 1804 CATAAAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAA 1863 Query 76692 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTAT 76751 | || | ||||| |||||||||||||| | ||| | || | | ||| || ||| Sbjct 1864 ATTCGAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTC 1923 Query 76752 TACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGC 76811 ||||| ||||||| |||||| || || | |||| ||||||| ||||| || | | | Sbjct 1924 CTCCTCCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTC 1983 Query 76812 CGTTAGATGTACCATTTGTTCCAGAAATATA--ACTTCCACATGCACGAATAT-TACTAA 76868 | || || | ||||| || || |||||| | || | | | |||| | || Sbjct 1984 CATTTGAAATTCCATTCGTACCTCTAATATACGAATT--TTGTCCTCTTATATCTTGTAC 2041 Query 76869 TAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCAT 76928 | | || ||||| || || || ||||| || |||||||| |||| | ||| || Sbjct 2042 T-GCTACACCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGA 2100 Query 76929 AGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGA 76987 | || || ||||| ||| |||| | ||| ||||||||| |||||||| | Sbjct 2101 ATATACCTTCTATTGAATCTGATTTCATAGATAA-AAGAAAACAAGACGACATTTGGGGT 2159 Query 76988 TGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGT 77047 | ||| || | |||||| ||||| || | ||||||||||| |||||| ||| | Sbjct 2160 CTAGGAGTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATC 2219 Query 77048 AGATTGTATGTTTCAATAACTGCT---TCTATATC-CCATTGATGAATTCCTACAGCGAC 77103 | || || ||||| ||| |||| |||||||| || | ||| || |||| | || Sbjct 2220 AAATGATAAGTTTC--TAA-TGCTTTATCTATATCATCAAT-ATGTATACCTATCGATAC 2275 Query 77104 ACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGA 77163 | ||| || | ||| || |||| ||| | | | || || || || || || || || Sbjct 2276 TCTCATTAATAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGA 2335 Query 77164 TTTTTCCAAAGTTTTAAAACCAAAATA 77190 | |||| || || ||||| |||||||| Sbjct 2336 TCTTTCTAATGTCTTAAATCCAAAATA 2362 >seq392 Length=30882 Score = 192 bits (212), Expect = 8e-44 Identities = 391/570 (69%), Gaps = 28/570 (5%) Strand=Plus/Minus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 |||||||| ||| || ||| | ||||||||||||||||||||||| ||| ||| Sbjct 27283 ATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAA 27224 Query 46684 GTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 || |||||| | | ||| | | ||||| | ||| || ||||| ||| ||| Sbjct 27223 GTTAGCCCATGTAATTTATT--TTGTTTTTTAAACCAGAAAATAGCACAAAAACTACCAC 27166 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC---GTAACTGGCAT 46798 ||| ||||| ||||||||| || ||| || | | ||| | || ||| Sbjct 27165 TAAACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAAGAATTGG--- 27109 Query 46799 CATTATGAATCCACCTTTG--AGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTC 46856 ||||| |||||| |||| |||||| ||| || || || ||| || || |||| Sbjct 27108 TATTATTAATCCA--TTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTC 27051 Query 46857 TATAGCATTAAAGAGA---AA---GtttttttCATCACTATCTTTAACATATGTATCTAT 46910 ||| || | ||| | | || | |||||||| |||| | ||| |||| || Sbjct 27050 TATTGCGTGAAATAAATTTAATCGCTCCTTTTCATC-----CTTT-ATATAATTATCAAT 26997 Query 46911 TAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACA 46970 || | ||| || ||||||||||||| || || | || || ||||| | |||| Sbjct 26996 CAACAAACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAAT-AAAATT 26938 Query 46971 TCTT-GCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTA 47029 |||| ||||| || || || || ||| | ||||| || |||||| || |||| Sbjct 26937 TCTTAGCTTCCGTTATTTGAACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTA 26878 Query 47030 TTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAG 47089 |||||||||| || ||||||||||| || |||||||| ||||||| |||||||| | Sbjct 26877 TTCCATCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCAT 26818 Query 47090 TCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATG 47149 | | ||| | | || || | ||| |||||| ||||| ||||| |||||||| |||| Sbjct 26817 TTAATTTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATG 26758 Query 47150 ACGCCTCTGCTTTTTTATACATATTCCATA 47179 | || |||||||||||||| | | ||||| Sbjct 26757 AAGCTTCTGCTTTTTTATAAAAGTCCCATA 26728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712925907168960