Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq60 134 3e-26 seq124 120 7e-22 >seq60 Length=41302 Score = 134 bits (148), Expect = 3e-26 Identities = 157/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||||||||| ||||| || ||||| || | ||| ||||| |||||||||| Sbjct 6140 CAAG-TGCAAAGTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCTA 6082 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || || || || || || ||||| | | ||||| ||||| ||||||| Sbjct 6081 GCTGTTTTCCTGCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTGAA 6022 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 ||||| || ||| |||| | |||| || || || ||||| ||||| ||||| | Sbjct 6021 TTTTTGCCTTTACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTTTC 5962 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| ||||| || ||||| | |||||||| Sbjct 5961 CCGTTAGAGTTTTTACGAAAATTTGCATTTT 5931 >seq124 Length=28153 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | || | ||| ||||||||||| |||||||| || | ||| ||||| || Sbjct 11548 TCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCTGATAATGTTCTACC 11607 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| ||| || || || || | ||||| || || | | ||||||||||| Sbjct 11608 ATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTT 11667 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||||||||||| || ||| |||| | | | ||||| ||| || ||||| || || Sbjct 11668 GTCTTGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGTGTTAT 11727 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || | || || || |||| ||||| Sbjct 11728 TGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || || || ||||||||||| ||||||||||| | || ||||| |||||||||| | Sbjct 11333 TGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGACAATGTTCTTCCATCTTCTAATTGT 11392 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || | ||||| || || | | ||||||||||| ||||| ||||| Sbjct 11393 TTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGTATTTTA 11452 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || ||| |||| | | | ||||| ||| || |||||||| || ||||| || || Sbjct 11453 GCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGAGTTATTGTTTTTCCTGTT 11512 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | || || || |||| ||||| Sbjct 11513 AATGTTTTTACAAAGATTTGCAT 11535 Score = 107 bits (118), Expect = 4e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | || | ||| ||||||||||| ||||||||||| | || ||||| || Sbjct 11776 TCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCCGACAATGTTCTTCC 11835 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| ||| || || || || | ||||| || || | | ||||||||||| Sbjct 11836 ATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTT 11895 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||||||||||| || ||| |||| | | || || || || |||||||| || Sbjct 11896 ATCTTGAATTTTTGCCTTAACATTCTCAATAGTATCCGATGGTTCAACATCAAGAGTTAT 11955 Query 152069 AGTTTTGCC 152077 |||||| || Sbjct 11956 AGTTTTTCC 11964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153806711487463