Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq143 331 1e-85 seq392 168 7e-37 >seq143 Length=5007 Score = 331 bits (366), Expect = 1e-85 Identities = 238/273 (87%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 8346 TCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 ||||||| |||||||||||||||||||| |||| |||||| ||||||||||||||| || Sbjct 1555 TCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTTGGCTCACTGCAACCTCTGC 1614 Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 1615 CTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACC 1674 Query 8465 AGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGC 8524 |||||| ||| ||||||||||||| ||||||||||||| |||||| ||||||||||| Sbjct 1675 CACCACCATGCCCAGCTAATTTTTGTGTTTTTAGTAGAGATGGGGTTTTACCATGTTGGC 1734 Query 8525 CAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCT 8584 |||||||||||| |||||||||||||| | ||||||| |||| |||||||||| || | Sbjct 1735 CAGGCTGGTCTCAAACTCCTGACCTCAAGATATCCACCAGCCTTGGCCTCCCAATGTTCA 1794 Query 8585 GGGATTACAGGCATGAGCCACCGCGCCTGGCCC 8617 ||||||||||||| |||||||| | || |||| Sbjct 1795 GGGATTACAGGCAGGAGCCACCACACCCAGCCC 1827 Score = 302 bits (334), Expect = 5e-77 Identities = 233/274 (85%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| ||||||||||||||||||||| ||| ||||||||||||||| | Sbjct 734 TCTCCCTCTGTCACCCAGGCTGGAGTGCAGTGGCACAGTCTTGGCTCACTGCAACCTCTG 793 Query 8404 CCTCCCGGGTTC-AAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCA 8462 ||| || || || |||| ||||||||||||||| ||| ||||| ||||||||||| | Sbjct 794 CCTTCCAGGCTCTAAGCAATTCTCCTGCCTCAGTCTCTGGAGTACCTGGGATTACAAGTG 853 Query 8463 AAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTG 8522 | |||||||| |||||||||| ||||||||||||||| |||||||||||||||| Sbjct 854 TGCACTACCACGCCTGGCTAATTTTT-TATTTTTAGTAGAGATGGGGTTTCACCATGTTG 912 Query 8523 GCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTG 8582 |||||||||||||| |||||||||||||| |||||||||| |||| |||||||||||||| Sbjct 913 GCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTG 972 Query 8583 CTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 ||||||||||||| |||||||| || || |||| Sbjct 973 CTGGGATTACAGGTGTGAGCCACTGCACCAGGCC 1006 Score = 228 bits (252), Expect = 8e-55 Identities = 212/265 (80%), Gaps = 7/265 (3%) Strand=Plus/Plus Query 8352 TGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGG 8411 ||||||||||||||||||||| ||| |||| |||||||||||||||||||||| || Sbjct 1083 TGTTGCCCAGGCTGGAGTGCAATGGTGCAATCTTGGCTCACTGCAACCTCCGCCTCCTGG 1142 Query 8412 GTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACC 8471 ||||||| ||||||||||||||| |||| |||||||||||||| ||||| ||||| Sbjct 1143 GTTCAAGTGATTCTCCTGCCTCAGTCTCCCAAGTAGCTGGGATTATAGGCATGCACCACC 1202 Query 8472 ACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTG 8531 | || | | ||||||| || | || || | | | ||| ||||||||| |||||| Sbjct 1203 ATGCTTGGGTTATTTTTG-ATATCTAATACATATGGTGTTCCACCATGTT----AGGCTG 1257 Query 8532 GTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTA 8591 ||||| |||||||||||||| ||||||| | | |||| | ||||||||||||| |||||| Sbjct 1258 GTCTC-AACTCCTGACCTCAGGTGATCC-CGTACCTCAGACTCCCAAAGTGCTAGGATTA 1315 Query 8592 CAGGCATGAGCCACCGCGCCTGGCC 8616 || |||| | || || ||||||| Sbjct 1316 CAATCATGCACTACTGCACCTGGCC 1340 >seq392 Length=30882 Score = 168 bits (186), Expect = 7e-37 Identities = 554/841 (66%), Gaps = 35/841 (4%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||| |||||| ||| ||||| || |||| | | |||||||||||||||| || || | Sbjct 27581 CATTACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTG 27522 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA 23324 | ||||| ||||| ||| ||| ||||| | || | | || | ||| Sbjct 27521 AAGAGATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCC 27462 Query 23325 TAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCAT-AGT 23383 ||| | ||| | ||||| || ||||||||||| ||||| |||| || || | | | Sbjct 27461 TAAACATTCTAACAATCTATCAGCCACAAATTCAATGTATTGTGACATTAA-TCTTGAAT 27403 Query 23384 TTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAG 23443 | || ||||| | | || | | ||| ||| ||| | ||| | || | Sbjct 27402 TCATTCCTATCAAGTCACAAGGTAAAGATTCACATATAAATGATCGTTCTACTTCTACTG 27343 Query 23444 CATCTTTAAT--TATT-TGAACAATAACTTCTTCACTAGGTGGATATTTTAAAT---ACT 23497 | ||||| | |||| |||||||| ||||| || | |||||| | ||| Sbjct 27342 CTTCTTTTACAATATTCTGAACAATTTCTTCTGG--TAATT---TATTTTCCAGCAGACT 27288 Query 23498 TAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 | | | |||||| ||| || ||||| |||||||| |||||||| ||||||||| Sbjct 27287 -ATATATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTAC 27229 Query 23558 AAAATGTTAATCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT 23616 ||| |||| || || ||| || | ||||||||| ||| || || ||| ||| Sbjct 27228 TAAAAGTTAGCCCATGTAATTTATTTT-GTTTTTTAAACCAGAAAATAGCACAAAAACTA 27170 Query 23617 CCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCA 23676 || ||| || ||||| || ||| ||| || || | ||| |||| | | Sbjct 27169 CCACTAAACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAAGA---A 27113 Query 23677 TTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACA-CTCA-ATTG 23734 || || | ||||||||| | ||| ||| || ||||| ||| || || Sbjct 27112 TTGGTATTATTAATCCATTTGGCAGCCCACAAAGCTTT--ATTTTTAACAGCTGGTATAT 27055 Query 23735 TTTCAATTGCTTTTAAGAGAAAAGTTTTTTCT-TCATT---ATCTGTTATATATGTATCA 23790 |||| ||||| | || | || ||| || || || ||| ||||||| ||||| Sbjct 27054 TTTCTATTGCGT----GAAATAAATTTAATCGCTCCTTTTCATCCTTTATATAATTATCA 26999 Query 23791 ATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAA 23850 || | ||||| || |||| ||||||||||| || | || || ||||| |||||| Sbjct 26998 ATCAACAAACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAAT 26939 Query 23851 CATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACA 23910 ||||||| | | |||||| || | |||||| | |||| |||||||| ||| Sbjct 26938 TTCTTAGCTTCCGTTATTTGAACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAAAACT 26879 Query 23911 ATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTT 23970 || |||||||| || ||||| || || | |||| ||||||||||||| |||||| || Sbjct 26878 ATTCCATCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCAT--TTT 26821 Query 23971 GA--TAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAA 24028 | |||||||| |||| || | ||| |||||||||| | || || ||||||||| Sbjct 26820 CATTTAATTTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAA 26761 Query 24029 A 24029 | Sbjct 26760 A 26760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521481787774200