Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq60 132 1e-25 seq124 120 7e-22 >seq60 Length=41302 Score = 132 bits (146), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||||||||| |||||||| || |||||||| || || || || || ||| Sbjct 5931 AAAATGC---AAATTTTCGTAAAAACTCTAACGGGAAAAACCATTACGCTTGATGTCGAA 5987 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| || ||||| || || ||| ||||| || || || ||||| || || Sbjct 5988 CCATCTGACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAGGGAATTCCACCA 6047 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| ||| |||| || || || ||||||||||| ||||||||||| || | | || Sbjct 6048 GACCAACAAAGACTAATTTTTGCAGGAAAACAGCTAGAAGATGGAAGAACCTTATCTGAC 6107 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || || | ||||| || || || |||| |||| Sbjct 6108 TACAATATTCAAAAGGAGTCTACTTTGCA-CTTG 6140 >seq124 Length=28153 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | ||||||||||| || || || || || || ||||| Sbjct 11532 CAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACTCTTGATGTTGAGCCATCAGAT 11473 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || || || || ||||| |||||||| || || || || || Sbjct 11472 ACCATTGAGAATGTTAAGGCTAAAATACAAGACAAGGAAGGAATTCCACCTGATCAACAG 11413 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| | ||||||||||| || | | ||||| ||| | Sbjct 11412 AGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTGTCGGATTACAACATT 11353 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| ||||| || || | ||||| ||| | ||| Sbjct 11352 CAAAAAGAGTCAACCCTACACTTAGTTTTAAGATTAAGA 11314 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | ||||||||||| || || || || || || ||||| Sbjct 11760 CAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACACTTGATGTTGAGCCATCAGAT 11701 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||| ||||| ||||| |||||||| || || || || || Sbjct 11700 ACCATTGAGAATGTTAAGGCAAAAATTCAAGACAAGGAAGGAATTCCACCTGATCAACAG 11641 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| | |||||||| || || | | || || ||| | Sbjct 11640 AGATTAATATTTGCAGGAAAACAATTAGAAGATGGTAGAACATTATCAGACTACAACATT 11581 Query 178104 CAAAAAGAATCAAC 178117 |||||||| || || Sbjct 11580 CAAAAAGAGTCCAC 11567 Score = 93.3 bits (102), Expect = 1e-13 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006 ||||||||| || || || || || ||| || || || || ||||| || || ||| Sbjct 11965 AGGAAAAACTATAACTCTTGATGTTGAACCATCGGATACTATTGAGAATGTTAAGGCAAA 11906 Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 ||||| || || |||||||| || || || || || || | || || || |||||||| Sbjct 11905 AATTCAAGATAAGGAAGGAATTCCACCTGATCAACAGAGATTAATATTTGCGGGAAAACA 11846 Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117 | ||||||||||| || | | ||||| ||| | |||||||| || || Sbjct 11845 ATTAGAAGATGGAAGAACATTGTCGGATTACAACATTCAAAAAGAGTCCAC 11795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203716502065882