Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq10 102 8e-17 >seq10 Length=1513010 Score = 102 bits (112), Expect = 8e-17 Identities = 355/543 (65%), Gaps = 17/543 (3%) Strand=Plus/Minus Query 16217 TGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCT 16276 |||| |||||| ||||| || || | ||| || ||| ||||| || | | ||| | Sbjct 1394449 TGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTAATTTATTT 1394390 Query 16277 CGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGAT 16336 |||| || ||||| ||||| ||| ||| || ||| ||||| || || ||| || Sbjct 1394389 TGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACAT 1394330 Query 16337 GCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACC 16396 ||| ||| | | || ||| || | | || || | || | |||||||| | || Sbjct 1394329 GCATTAGCTACAATTCTTTCAGCAAAAG-AGT-TCGT-ATCATTTATCCATTTAGCTGCC 1394273 Query 16397 CATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTT----CTC 16452 ||| ||||| | |||||| || |||| || || | ||| || || ||| Sbjct 1394272 CATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTC 1394213 Query 16453 TTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTAT 16512 | |||| ||| | ||||| ||||||| | |||||| || |||| |||||||| Sbjct 1394212 TCTTTCTC----ATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTAT 1394157 Query 16513 GTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCAC 16572 || || | ||||| ||||| |||| || | || || ||||||||||| | | Sbjct 1394156 ATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTT-CTC 1394098 Query 16573 GTAAAATCGTTC-CGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA 16631 ||||| | | || | || || || || || ||||| || |||||||| || | Sbjct 1394097 TTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTA 1394038 Query 16632 ATATGTGCTTAATGAAATATTTTTC-GTCAGATGTAAGAATATGCCAA-TCTTTTAAATC 16689 | || || || |||| ||||| | | || || | | | | || ||||| ||||| Sbjct 1394037 GCACATGTTTTATAAAATGCTTTTCATTTACATTTA--ATTTTTCAAAGTCTTTCAAATC 1393980 Query 16690 TTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTT 16749 | |||| ||| | |||||| | |||||||| ||| | || |||||||| | || Sbjct 1393979 ACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATT 1393920 Query 16750 CCA 16752 ||| Sbjct 1393919 CCA 1393917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511410174438520