Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq7 167 2e-36 >seq7 Length=1057013 Score = 167 bits (184), Expect = 2e-36 Identities = 378/561 (67%), Gaps = 8/561 (1%) Strand=Plus/Minus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 ||||||| ||| | ||| ||||| || | || || |||| || || || ||| Sbjct 916075 TGAGCATTTCCCAATACATGAATAAATTCAGCTGGTTGTAAATTACATACTTGTGCTATC 916016 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 || | || || | ||||||| |||||| || ||||| || || | || | |||| Sbjct 916015 ATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACACCAAGACCTAAATCACAA 915956 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACA 101887 ||||||||||||| ||| || | ||||||||| | ||||||||||||| ||| | | Sbjct 915955 GATCTTTGATACATAATACATGATAATTTTCCATCAAAAACATAAAATTGACATAAAATA 915896 Query 101888 TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATC 101947 |||||||| || || |||||| | | ||| |||||||| ||||| | | || Sbjct 915895 TGACAAGGGGGTAATGCCATTTGATCTAAATCTTTTACATTCCATGCACATAAAATAATT 915836 Query 101948 CTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCT 102007 | |||| ||| || | |||| || || || | | ||||| ||| ||||| ||| Sbjct 915835 CGTCTACATGTCGGATCGTTTTTAATTAAATTTATAATATTTTTTAGTTGATCAACACCT 915776 Query 102008 TCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAA 102066 | |||||||||| || | | | || ||||||| || || || |||||||| ||||| Sbjct 915775 TTATCTTTATAATCAGCATGC-ATATCTGTATATTCAGCACCAAAGTGCCTCCATTGAAA 915717 Query 102067 TCCATACACAGGTCC-AAG--ATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAA 102123 ||| || | || || ||| || |||| ||| || |||| || | |||||||| Sbjct 915716 TCCGTAAATTGGACCTAAGTCATTAACTTC-TCTATGAAATAATTTCCTA--TTATCTAA 915660 Query 102124 AAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCT 102183 ||| ||| | ||||| || ||||| || || | || |||| || | Sbjct 915659 AAACTCTCTTGTCCCATTAGCTTCCCATATTCTTACATTTTTTTCTAATAGTGTATTTCC 915600 Query 102184 GTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCT 102243 | || ||| || |||||||| |||| ||||||| | |||||| ||||| | | Sbjct 915599 ATTTGTTTCTCCCCTTATAAACCATAACAACTCTTCAATGATACCTCTTACAAATAATTT 915540 Query 102244 CTTAGTAGTTAAAAGTGGAAA 102264 || || ||||| | |||||| Sbjct 915539 TTTTGTTGTTAATAATGGAAA 915519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361248289782911