Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq553 363 5e-96 >seq553 Length=1089 Score = 363 bits (402), Expect = 5e-96 Identities = 203/204 (99%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48299 GACATGAGGTTGCCCCGTATTCAGTGTCGCTGATTTGTATTGTCTGAAGTTGTTTTTACG 48358 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1083 GACATGAGGTTGCCCCGTATTCAGTGTCGCTGATTTGTATTGTCTGAAGTTGCTTTTACG 1024 Query 48359 TTAAGTTGATGCAGATCAATTAATACGATACCTGCGTCATAATTGATTATTTGACGTGGT 48418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1023 TTAAGTTGATGCAGATCAATTAATACGATACCTGCGTCATAATTGATTATTTGACGTGGT 964 Query 48419 TTGATGGCCTCCACGCACGTTGTGATATGTAGATGATAATCATTATCACTTTACGGGTCC 48478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 TTGATGGCCTCCACGCACGTTGTGATATGTAGATGATAATCATTATCACTTTACGGGTCC 904 Query 48479 TTTCCGGTGATCCGACAGGTTACG 48502 |||||||||||||||||||||||| Sbjct 903 TTTCCGGTGATCCGACAGGTTACG 880 Score = 226 bits (250), Expect = 9e-55 Identities = 125/125 (100%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 1 GGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 879 GGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCG 820 Query 61 TTCTTCTTCGTCATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAGAAAGGAAACG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 819 TTCTTCTTCGTCATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAGAAAGGAAACG 760 Query 121 ACAGG 125 ||||| Sbjct 759 ACAGG 755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155083582681248