Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 389 5e-103 seq10 187 3e-42 >seq6 Length=831307 Score = 389 bits (430), Expect = 5e-103 Identities = 967/1458 (66%), Gaps = 29/1458 (2%) Strand=Plus/Minus Query 53183 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 53242 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | |||||| Sbjct 424436 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 424377 Query 53243 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 53302 || || ||||||||||| | | | | |||||| | || | | | || ||||| | | Sbjct 424376 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTT 424317 Query 53303 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGT 53359 |||| ||||||| |||| | ||| | |||| Sbjct 424316 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 424257 Query 53360 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCA 53416 | || || | || || | || | ||| ||||| || |||||||| || ||| | Sbjct 424256 AATATTCCTTGGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT-- 424200 Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATT 53475 || | |||| | | ||||| ||| | ||||| || ||||| || || ||||| ||| Sbjct 424199 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 424141 Query 53476 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 53533 || |||| ||||| ||| | || ||||||| |||| || ||||| | |||||| Sbjct 424140 TAATTCTTTAGCTTCTTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 424083 Query 53534 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 53593 |||||||| || || || || ||||||||||| || ||||| || ||||||||||| | Sbjct 424082 AATCCTTGTACTCCTATTCCAATAGGTCTATGCCTTTTATTTGATCTTTCAGCTTCTTTA 424023 Query 53594 ATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACA 53653 | ||||||||||| | || |||||||||| | ||||| ||| | ||| | | Sbjct 424022 ACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 423963 Query 53654 TCCTTCAGTTTGAGAAAATCAAA-----TTGTCCATCTAT-TACAAACATGTTCAATGCA 53707 || | | ||| ||||| ||| || | ||||| ||||| || |||||| Sbjct 423962 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA 423903 Query 53708 ATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 53767 || || || | ||||||||| ||||| |||| || | ||||| || || ||| Sbjct 423902 ATGGACGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAA 423843 Query 53768 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 53827 || | ||||||||| || || ||||||||||||| ||| || || ||||| ||| Sbjct 423842 CATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGGTTCGATTTAGAATTACATGCA 423783 Query 53828 TCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAG 53887 || ||||| | || |||| ||||||||| || ||| || || || || ||| Sbjct 423782 TCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCAT 423723 Query 53888 ACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAAT 53947 | | | || | | | |||| | |||||| ||||||| |||||| ||| Sbjct 423722 AAATCTTGTGCAAGAACTGTTTTTTTGCCTAAATTTTCTTCTTCGTATTTTGTATATAAT 423663 Query 53948 CGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 54007 |||||| || || |||||| | || || |||||||||| || ||||| || Sbjct 423662 TTTTCAAATTCTTCACCCCAAGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAA 423603 Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 | ||| | | ||||| |||| ||||||||| | |||||| | ||||| ||| | Sbjct 423602 GTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 423543 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 |||| ||| | | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 423542 AATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 423483 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187 | |||||| |||||||| ||||| | |||| | | | || | ||| ||| Sbjct 423482 AAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCA 423423 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 || ||||||| ||||| || || | |||| ||||||| |||||||||| | |||||| Sbjct 423422 CCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTT 423363 Query 54248 GATGCACCATTGGTCCCGGAGAT---ATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 ||| |||||| || || ||| | | || || | | ||||| | | Sbjct 423362 GATATACCATTAGTTCCTCTGATGTAAGAATTTTGAC---CTCTAATATCTTGTACAGCC 423306 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | |||||| || ||||| ||||| || ||||| ||| | ||||| || ||| | || Sbjct 423305 ACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATA 423246 Query 54365 CCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 54423 || ||||| |||| ||| || ||| || ||| || |||||||||| | | Sbjct 423245 CCTTCTATTGAATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTGG 423187 Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||||||| ||||||||| ||||||| ||| || ||||| |||||| || | || || Sbjct 423186 TGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAGTATTTTTGTGACATTAAATG 423127 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || || | ||| || | ||| | ||| ||||||| | || | |||||| Sbjct 423126 ATATGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAA 423067 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 | || ||||| | ||||| || || || || || | ||||| || |||| || Sbjct 423066 TAAATGTTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAA 423007 Query 54604 AGTTTTAAAACCAAAATA 54621 |||||||| |||||||| Sbjct 423006 TGTTTTAAATCCAAAATA 422989 >seq10 Length=1513010 Score = 187 bits (206), Expect = 3e-42 Identities = 378/556 (68%), Gaps = 4/556 (1%) Strand=Plus/Minus Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 ||||| ||||| || || ||||||||||| ||||| || ||| || | || | Sbjct 1394458 AAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGT 1394399 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 24260 | | | ||||||| ||||||||| | ||| |||| ||| || |||||| Sbjct 1394398 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1394339 Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTT 24320 || || ||| || | || |||||| || || | | |||| |||||| || Sbjct 1394338 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTA 1394279 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 24380 ||||| || || ||||||| || || | || ||||||| ||| | || Sbjct 1394278 GCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTT 1394219 Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440 | | || || ||| ||| ||| ||||||| || | |||||| |||| || || Sbjct 1394218 AATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGT 1394159 Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || ||||||| || |||||||| | || || | | || || | || ||||||||| Sbjct 1394158 ATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCT 1394099 Query 24501 ATACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 24559 | ||||| | || ||||||||||| |||||||| ||||| ||||||||||| || Sbjct 1394098 CTTAAAAATT-TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGC 1394040 Query 24560 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATAT 24618 | |||||||||||||||| ||||| | | ||| ||| ||| || || || | || Sbjct 1394039 TAGCACATGTTTTATAAAATGCTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAAT 1393981 Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 | | |||| ||| | |||||| | ||||||||||| ||||| || |||||||| | || Sbjct 1393980 CACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAAT 1393921 Query 24679 TCCAGATGTCATGATA 24694 |||| | ||| |||| Sbjct 1393920 TCCATACTTCAGGATA 1393905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593716694375280