Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq554 269 8e-68 >seq554 Length=5135 Score = 269 bits (298), Expect = 8e-68 Identities = 573/850 (67%), Gaps = 4/850 (0%) Strand=Plus/Plus Query 23294 CCTTTACCAACTTCATCAGTGACCCGCACGACCTGTCGCAAGACCATAGCTCCCCAGGTA 23353 ||||||||||||||||| || | || || || | | | ||||| |||||||| | Sbjct 2105 CCTTTACCAACTTCATCCGTTTCACGTACAACATTTTTTAGAACCATGCTTCCCCAGGCA 2164 Query 23354 TTTCGAATCTGCTCCTCCATCCACCGGGACTGATTGCCGTTAGTAAGGCTGTATTTGGTC 23413 | ||||| ||||||||||||||| |||||||| ||| ||| || |||||||||||| Sbjct 2165 TCCCGAATTTGCTCCTCCATCCACGGGGACTGAGAGCCATTACTATTGCTGTATTTGGTA 2224 Query 23414 AGGAGCAGGCGGACGACAGGTTCAAAGCCGCCCAAATCGACGGTTTCAAGCAGGTCGAGC 23473 || | | || || |||| || || || | ||| ||| | | ||||| || | Sbjct 2225 AGCAAAATACGTACATCAGGCTCGAACCCTTTAAGATCAACGTTCTTGAGCAGATCACGA 2284 Query 23474 AGCATGGTGAAAAACTGAAGAACTGATGCATAGTCGAACAGCTCTGCAGGGGTTGCTACC 23533 ||||| ||||||||| || | || | ||||| |||| ||| ||||| || | || Sbjct 2285 AGCATATCGAAAAACTGCAGTGCGGAGGTGTAGTCAAACAACTCAGCAGGCGTGGGAACA 2344 Query 23534 ACGATGACGTCAGCAGCACAGACAACGTTAATAGTTCCCGTACCCAAGTTTGGCGCGCTG 23593 | | || ||||||||||| || || ||||| || || |||||| ||| ||||||||| Sbjct 2345 ATCAGCACATCAGCAGCACATACGACATTAATCGTGCCGATACCCAGGTTAGGCGCGCTG 2404 Query 23594 TCTATGACGATAATGTCGTAGTTATCCCATACAGACTCGATAGCAGCACGAAGCATCAGA 23653 || || || || | || |||| || |||| || || || || |||||||| Sbjct 2405 TCAATAACTATGACATCATAGTCATGAGCAACAGTTTCAATGGCCAGTCGGAGCATCAGG 2464 Query 23654 TGAGG-GGGATGAGGTAGCTTCCCCTCGGAATGGTACTGCATCAGATCTGTTTCAATGCG 23712 || || | || || || || || || | | ||| | || |||||||| || Sbjct 2465 TGTGGATCGGTG-GGCAGTTTACCTTCATCAAATTTGCCCATTAACTCAGTTTCAATACG 2523 Query 23713 GTGAAGGGCCAGGCAGCTGGGGATTATGTCGAGACCCGGCCAGCATGTTGGTTTTATCGC 23772 ||| || ||||| ||| || || ||||| || ||||||||||| || || ||||| || Sbjct 2524 GTGCAGAGCCAGACAGGAAGGAATAATGTCAAGCCCCGGCCAGCAAGTGGGCTTTATTGC 2583 Query 23773 ATATTCAGCGTTGTCGCGTTTACCC-AGGTAAAATGGAAGCAGTGTATCGTCTGCGTGAA 23831 ||| | | ||| | ||| ||| || || || || || || || || ||||| |||| Sbjct 2584 ATAAGTGACATCGTC-CTTTTCCCCAAGATAGAAAGGCAGGAGAGTGTCTTCTGCATGAA 2642 Query 23832 TGTGCAAATCAGGAACGTAACCGTGGTACATAGATGCAGTCCCTTGCGGGTCGTTCCCTT 23891 | || | ||| || || | ||||| ||||| || || || || || |||||||| |||| Sbjct 2643 TATGAAGATCTGGTACCCATCCGTGATACATTGAGGCTGTTCCCTGGGGGTCGTTACCTT 2702 Query 23892 CAACGAGTAGGACGCGGTGCCCTTGCAAGGCTAACCATTGCGCCTGGTGTACTGCAGATG 23951 | ||||| | || || |||| | || || | || || | || || | | || Sbjct 2703 CCACGAGCAAAACACGTAGCCCCTTCAGAGCCAGATCCTGAGCAAGATGAACAGAAACTG 2762 Query 23952 AGGTTTTATAAACCCCTCCCTTGTGTGACATAACGGAAAGTACAACCGGGTTTTTATCGT 24011 ||||||| ||||| || || || || | ||| | || || | || | Sbjct 2763 AGGTTTTGTAAACGCCACCTTTATGGGCAGCAACCCCGATCACCGGTGGAAATACGTCTT 2822 Query 24012 CAGGTCTTTGGTTTGGGTTACCAAACACACTCCGCATATGGCTAATTTGGTCAATTGTGT 24071 ||| | | | | | ||||||||||| |||||||| ||||||| |||||||| | Sbjct 2823 CAGCACGTCGCAATCGCGTACCAAACACATCACGCATATGATTAATTTGTTCAATTGTAT 2882 Query 24072 AGCCAGCGCGACGTTCTACTCGGCCCCTCATCTCAAAATCAGGAGCCGGTAGACGACCAG 24131 | ||| | || | || || || || | || || | ||| || |||||| || || | Sbjct 2883 AACCAACACGTTGCTCAACCCGTCCTCGAATTTCCATATCCGGGTGCGGTAGTCGCCCTG 2942 Query 24132 CTTTTTCCGC 24141 |||| || || Sbjct 2943 CTTTCTCGGC 2952 Score = 158 bits (174), Expect = 4e-34 Identities = 334/488 (68%), Gaps = 13/488 (3%) Strand=Plus/Plus Query 22536 GGTAATCCGGCGGTATTCATGCAGCGGTTCACGATATTACGGTCGATGCCCTCTGCTTCA 22595 || ||| |||||| || || |||||| | | || ||||| || || || ||| Sbjct 1094 GGCAATTTGGCGGTGTTGATACAGCGGGTAATAATCTTACGTGAAATATTTTCCGCATCA 1153 Query 22596 GCCAGGGCTTTAACGTTACCATCAAATTCTTTCAG---TCGGC--GCAAGTACCGTTTCC 22650 ||||| || || || ||| ||||||| ||| | ||||| ||| || || | | Sbjct 1154 GCCAGCGCAGAAATATTTCCAGCAAATTCATTCTGCAATCGGCTTGCA--TAACGCTGAC 1211 Query 22651 CGCGTTCGTATGCACTGGTTGGCCGATAGTCGTTACCCAA-CTGTGACAACTGCTGC-AT 22708 | ||||| || ||||| ||||| ||||| ||||||||||| ||| || || ||| || || Sbjct 1212 CACGTTCATAAGCACTTGTTGGGCGATAATCGTTACCCAATCTG-GATAA-TGCAGCCAT 1269 Query 22709 TTGTTCATCATCCAGCTCTCCAACGAGAACCCGATAATCGCTACCAGTGATGATGGCTGT 22768 || |||||||||||||| ||||| ||||| |||||||| || | || | || | Sbjct 1270 CTGCTCATCATCCAGCTCGCCAACCAGAACACGATAATCACTTTCGGTAAGTGCAGCAGC 1329 Query 22769 TTTGCGGCGGCGTGAGCCATCGGCAATTTCGATAATGCCTGACGTCCTTCTGGCGAACGC 22828 ||| || ||||| |||||||||||||| || | || || |||| ||||||| Sbjct 1330 TTTACGACGGCGACTCCCATCGGCAATTTCTATGACACCAGATACTCTTCGACCGAACGC 1389 Query 22829 GGGGTTCTGCTGTCCTG-AAGTGAGGAATGAAGGGATAAGGTCGGCCAGCGCTGATTCGT 22887 || |||| || || | ||| || || |||||||| || || |||| || || Sbjct 1390 CGGTGTCTGTTGACCAGTCAGT-AGAAAAGAAGGGATGAGATCATCCAGTGCGTCCTCAG 1448 Query 22888 TCAGCAATTCCTGATCACGTTCATTACCGAGCCAAACCATTGTGGCCTTTTCGACTTTAT 22947 | |||| ||||| |||||||||||||| ||| ||| | || ||| || || ||| Sbjct 1449 TAAGCAGCTCCTGGTCACGTTCATTACCTGACCATACCCGAGAGGTCTTCTCAACACTAT 1508 Query 22948 CAGCAGGAATGGTTTCCAGCTTAAAAGTCACGTTGCGGCCGCAAACCGGTAGCGTAATGC 23007 || | | | ||| || |||| |||| | || || || || || | |||||| Sbjct 1509 CACCCCGGAGCACTTCAAGAGTAAACTTCACATCCCGACCACATACAGGCAAAGTAATGG 1568 Query 23008 TATTCCCG 23015 ||| ||| Sbjct 1569 CATTACCG 1576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148277236107234