Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 >seq6 Length=831307 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| |||||||||||| | || |||||||||||| | || || || || ||| Sbjct 381011 AAAATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTCGCTGGAAAA 381070 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||||| || ||| | ||| | | ||||||||||||||||| |||||||| | ||| Sbjct 381071 CAATTAGAGGATGGAAGAACACTATCTGATTACAATATTCAAAAAGAATCTACCTTACAC 381130 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 | || ||| ||||| ||||||| Sbjct 381131 TTAGTTTTAAGATTAAGAGGAGG 381153 Score = 100 bits (110), Expect = 2e-16 Identities = 105/136 (77%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || |||||||||||| | || ||||| || |||||||| ||| Sbjct 381248 GATAAAGAAGGTATTCCTCCTGATCAACAAAGATTAATTTTTGCCGGAAAACAATTAGAA 381307 Query 25188 GAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGT 25245 ||| | || ||||| | || ||||| |||||||| ||||| ||| | ||| | || | Sbjct 381308 GATGGTAGAACACTAT--CTGACTACAACATTCAAAAAGAATCGACTTTACACTTAGTTT 381365 Query 25246 TACGATTACGAGGAGG 25261 || ||||| ||||||| Sbjct 381366 TAAGATTAAGAGGAGG 381381 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||||| || || ||||| ||||| || ||||| || Sbjct 381383 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 381442 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | || |||||| |||||||||||| | || ||||| Sbjct 381443 GATACTATTGAAAACGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 381502 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| || | || ||||| || |||||||| ||||| | ||| | | ||||||||| Sbjct 381503 CAACGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGATTACAAT 381562 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| |||||||| | || | || ||| ||||| ||||||| Sbjct 381563 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 381609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410793490646654