Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq7 165 6e-36 >seq7 Length=1057013 Score = 165 bits (182), Expect = 6e-36 Identities = 387/582 (66%), Gaps = 4/582 (1%) Strand=Plus/Minus Query 97051 TCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACT 97110 |||| ||||| ||||| ||||||| ||| || ||||||||||| | || | Sbjct 916096 TCAACATGATTATTATAAACATGAGCATTTCCCAATACATGAATAAATTCAGCTGGTTGT 916037 Query 97111 AAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGC 97170 |||| | || || || |||||| | || |||| ||||||| |||||| || || || Sbjct 916036 AAATTACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGA 915977 Query 97171 ACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACAC 97230 || || || || | |||| ||||||||||| | ||| || | ||||||||| | Sbjct 915976 ACACCAAGACCTAAATCACAAGATCTTTGATACATAATACATGATAATTTTCCATCAAAA 915917 Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 |||||||| |||| || | |||||| ||||| || ||||||| | |||| ||| Sbjct 915916 ACATAAAATTGACATAAAATATGACAAGGGGGTAATGCCATTTGATCTAAATCTTTTACA 915857 Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATC 97350 ||||| ||||| | | |||| |||| || || | | | || ||| || || Sbjct 915856 TTCCATGCACATAAAATAATTCGTCTACATGTCGGATCGTTTTTAATTAAATTTATAATA 915797 Query 97351 TGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCT 97410 | |||| ||||||||| |||| | ||||| | | | || |||||| || Sbjct 915796 TTTTTTAGTTGATCAACACCTTTATCTTTATAATCAGCATGCATATCTGTATATTCAGCA 915737 Query 97411 CCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAG 97470 ||||| ||||||||||| ||||| |||| || || | ||| ||||||||| | | Sbjct 915736 CCAAAGTGCCTCCATTGAAATCCGTAAATTGGACCTAAGTCATTAACTTCTCTATGAAAT 915677 Query 97471 AA--ACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAG 97528 || || | ||||||||| | || | ||||| || ||||| || ||| Sbjct 915676 AATTTCCTA--TTATCTAAAAACTCTCTTGTCCCATTAGCTTCCCATATTCTTACATTTT 915619 Query 97529 ATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAA 97588 | || || || | | || ||| || |||||||| ||||| ||||| | | Sbjct 915618 TTTCTAATAGTGTATTTCCATTTGTTTCTCCCCTTATAAACCATAACAACTCTTCAATGA 915559 Query 97589 CACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAAT 97630 |||||| ||||| | | || |||||||| | ||||||| Sbjct 915558 TACCTCTTACAAATAATTTTTTTGTTGTTAATAATGGAAAAT 915517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346781206329770