Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7 313 4e-80 seq6 190 3e-43 seq11 185 1e-41 >seq7 Length=1057013 Score = 313 bits (346), Expect = 4e-80 Identities = 515/732 (70%), Gaps = 17/732 (2%) Strand=Plus/Minus Query 205368 TTTTAATCCATTAATATGATTAACATATATATGTGCATTACC-AATATTATGAATAAATT 205426 |||||| | | || ||||||| ||| | ||| ||||| || |||| ||||||||||| Sbjct 916106 TTTTAAGCTTTCAACATGATTATTATAAACATGAGCATTTCCCAATAC-ATGAATAAATT 916048 Query 205427 CATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAA 205486 || ||||| ||||||| || ||||| |||||||| || |||| | ||| ||||| Sbjct 916047 CAGCTGGTTGTAAATTACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAA 915988 Query 205487 CATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGAT 205546 ||| ||||| ||||| | ||| | |||| |||||||||||||| ||||| | Sbjct 915987 TATTGAATGGAACACCAAGACCTAAATCACAAGATCTTTGATACATAATACATGATA--- 915931 Query 205547 ATTTATTATTAATTACATGAAATTGTACA-AAACAATGACAAGGTGGTATAACCATATTT 205605 |||| || || |||| |||||| ||| ||| ||||||||| |||| |||| | Sbjct 915930 ATTTTCCATCAAAAACATAAAATTG-ACATAAAATATGACAAGGGGGTAATGCCATTTGA 915872 Query 205606 TCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttatttttt 205665 || | |||| | |||||| || ||| || || |||| || || | ||||| Sbjct 915871 TCTAAATCTTTTACATTCCATGCACATAAAATAATTCGTCTACATGTCGGATCGTTTTTA 915812 Query 205666 attttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATA 205725 ||| ||||||||||| | ||| |||||||| |||| || | |||||| | || |||| Sbjct 915811 ATTAAATTTATAATATTTTTTAGTTGATCAACACCTTTATCTTTATAATCAGCATGCATA 915752 Query 205726 TCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 || |||||| ||||||||| || | ||||||||| || |||| ||||||||| ||| Sbjct 915751 TCTGTATATTCAGCACCAAAGTGCCTCCATTGAAATCCGTAAATTGGACCTAAGTCATTA 915692 Query 205786 TCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaa 205845 ||| ||||| | || | || | || | | | | || ||||| | |||| Sbjct 915691 ACTTCTCTATGAAATAATTTCCTATTATCTAAAAACTCTCTTGTCCCATTAGCTTCCC-- 915634 Query 205846 atatggattcctttattttt--taGAATATTTGTATTAGTTGATCCAGATATAAACCATA 205903 |||| | | ||| ||| | ||| ||||| ||| ||| ||| ||||||||||| Sbjct 915633 ATATTCTTACATTTTTTTCTAATAGTGTATTTCCATTTGTTTCTCCCCTTATAAACCATA 915574 Query 205904 ATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAAT 205963 | || ||||||| || ||||| ||| | | ||||||||| ||||||||||| | | Sbjct 915573 ACAACTCTTCAATGATACCTCTTACAAATAATTTTTTTGTTGTTAATAATGGAAAATATT 915514 Query 205964 CATCTAATTTATATTTCATAGTTAAACCATATACAGTTTTTGTATCTACACCTGTTCTAT 206023 || ||| ||| ||||||| | | ||| || | || | | | ||||||||||||| Sbjct 915513 CACTTAAATTAAATTTCATCATATATCCAAATTTACTTAATACACCAACACCTGTTCTAT 915454 Query 206024 --TTTTGGTTATTCTTCCATTAGATAATATTTCTGATATACCTTTTAAATATTGATATTC 206081 | ||| |||| |||||| || ||| || ||||| ||||||||||||||||| Sbjct 915453 CATCTTGTTTAT--TTCCATGCATTATTATATCATATATAATATTTAAATATTGATATTC 915396 Query 206082 ATCTGATGATGT 206093 | |||||||| Sbjct 915395 A--GGATGATGT 915386 >seq6 Length=831307 Score = 190 bits (210), Expect = 3e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| ||| |||| || ||||| || ||| | || ||||| || Sbjct 381383 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 381442 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| ||||||||||||||||||||||| ||||||||||| Sbjct 381443 GATACTATTGAAAACGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 381502 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| |||||||||||||| || || |||||||| ||||| ||| Sbjct 381503 CAACGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGATTACAAT 381562 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||||||||| || || ||||| |||||| | ||| |||| ||| Sbjct 381563 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGGT 381610 Score = 176 bits (194), Expect = 7e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || |||| || |||| || ||||| || ||| | || ||||| || Sbjct 381155 ATGCAGATTTTCGTAAAAACTTTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCC 381214 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||| ||||||||||||||||| || ||||||||| Sbjct 381215 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCTGATCAA 381274 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| |||||||||||||| ||| || ||||| || || || || Sbjct 381275 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 381334 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| ||||| || || |||||| | ||| |||| ||||| Sbjct 381335 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGGTAT 381384 Score = 172 bits (190), Expect = 8e-38 Identities = 161/205 (79%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGA 124623 |||| ||||| || ||| | || ||||| || ||||| ||| || | ||| | Sbjct 380952 CAGGAAAAACAATTACTCTTGATGTTGAACCATCAGATACTATTGAAAACGTTAAAGCTA 381011 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 |||||||||||||||||||||| ||||||||||||||||| | ||||| || ||||||| Sbjct 381012 AAATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTCGCTGGAAAAC 381071 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 ||||||||||| | ||||| || ||||| ||||||||||||||||| || || || | Sbjct 381072 AATTAGAGGATGGAAGAACACTATCTGATTACAATATTCAAAAAGAATCTACCTTACACT 381131 Query 124744 TGGTTTTACGTTTACGAGGTGGTAT 124768 | |||||| | ||| |||| ||||| Sbjct 381132 TAGTTTTAAGATTAAGAGGAGGTAT 381156 >seq11 Length=1635978 Score = 185 bits (204), Expect = 1e-41 Identities = 169/211 (80%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||| |||| || ||||| || ||| | || ||||| || Sbjct 1474745 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 1474686 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||||||| ||| ||||| || ||||| |||||||||||||| || || ||||||| Sbjct 1474685 TGATACAATTGAAAATGTTAAAGCA-AAAATCCAAGATAAAGAAGGAATTCCCCCTGATC 1474627 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | ||||| || |||||||||||||| ||| | |||||||| || |||| Sbjct 1474626 AACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTATA 1474567 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 | ||||||||||| ||||| || |||||||| Sbjct 1474566 ACATTCAAAAAGAGTCAACCTTACATTTGGT 1474536 Score = 114 bits (126), Expect = 2e-20 Identities = 300/457 (66%), Gaps = 4/457 (1%) Strand=Plus/Plus Query 202739 TATTTTTTAATAAATAAATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATAT 202798 |||||| | ||| |||||| | ||||| |||||| |||| | | |||| ||||||| Sbjct 420164 TATTTTGTCATATATAAATTTATGTCAAAATTACGTTTACAACTATTATAATCCATATAT 420223 Query 202799 CTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGAC 202858 | |||||| ||||| | ||| || ||||| | |||||||| ||| ||| || Sbjct 420224 CGAATTTTTCCAAAAACACTTCTCTCATTCCAACTTTGATCATGAACACCCATAATAGAT 420283 Query 202859 CACATACATCCAA-CATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAA 202917 ||||| || | ||||| |||| | |||||| ||| | ||| || | |||| Sbjct 420284 GACATA-ATGGATGCATATGCATTAGCTGTTTTTCCATCAATAGCAAATTCATTAGTTAA 420342 Query 202918 ATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGC 202977 | ||||| ||| | || || ||| | | |||||||| || Sbjct 420343 TTTAATTGCACATTTTAATGCCGCTTTAGAATTTTCTGACCAGTTCAGAATTTTTTTGGC 420402 Query 202978 CCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGC 203037 |||||||||||||||| || | || ||| |||| | | | | |||| ||| | Sbjct 420403 CCAATACATTCTTAAAAATTCGTGAATTGTACCTTCATTTACTAATTGTAATTGGCAACA 420462 Query 203038 ATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGAT-ATAAACTATATATATGTT 203096 |||||| | || | ||| ||| |||||| || | | |||| | ||||| ||| | Sbjct 420463 ATTCCAAATATCATTATGTGTTCTAGCATTTCGAAAATCTTCATAATC-ATATAAATGGT 420521 Query 203097 TTCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTA 203156 | || | || | ||||| |||| | | | ||||||||| || || ||||| | Sbjct 420522 TCCTTTTGTCTAGCTCATGTTTTTTTAAACTCTCTTTTGCCCAATCCTTGGCCCCATTAA 420581 Query 203157 TATTATCGTAATTTTCATTATAATAACAAAAATTATC 203193 |||||| || || | |||||| ||||||||||| || Sbjct 420582 AATTATCATAGTTCTTATTATAGTAACAAAAATTGTC 420618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755449758044800