Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 >seq6 Length=831307 Score = 100 bits (110), Expect = 2e-16 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | |||||| || || ||||| | || || ||||||||||||||||| || Sbjct 381383 TACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAG 381324 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 |||||| | ||| || | |||||||| || | || | | || ||||| || Sbjct 381323 --ATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGG 381266 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCT 118686 ||| || || || || ||| ||||| |||||| | ||| | ||| || | || | | Sbjct 381265 AGGAATACCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCGGATGGT-T 381207 Query 118687 CGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || | || | ||||| ||||| | ||||||||| ||||||||||| Sbjct 381206 CAACATCAAGAGTGATTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCAT 381155 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GC 118569 |||||| | |||||| || || || || | ||||| ||||||||||| |||||||| | Sbjct 381610 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGA 381551 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || | || || | ||||||||||| | || | || |||||||| || | Sbjct 381550 TAAT-GTTCTACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTG 381492 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || || ||| |||||| |||||| | ||| | || || | || | || Sbjct 381491 GGATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGT-TCA 381433 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| ||||| | ||||||||||| || ||||| Sbjct 381432 ACATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 381383 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | |||||| || || ||||| | ||||| ||||||||||| ||||||| | Sbjct 381155 TACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATATTGTAAT--C 381098 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 |||||| | | |||||| | |||||||||||| | || | | || ||||| || Sbjct 381097 AGATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGG 381038 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTC 118669 || || || || || ||| |||||| |||||| | ||| Sbjct 381037 TGGGATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTC 380996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433826905089412