Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6 84.2 3e-11 >seq6 Length=831307 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||||||| | || || ||||| || || || ||||||||||||||||||| Sbjct 381609 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGAT 381550 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | |||| |||| || || ||||| || || | ||| ||||| || | || Sbjct 381549 AATGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGGG 381490 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||| | ||| |||| | || | || | | | || || | ||| || Sbjct 381489 ATAC-CTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAAC 381431 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| | || || ||||| || |||| || ||||||||||||||||| Sbjct 381430 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 381383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571812875357080