Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq10 266 3e-66 >seq10 Length=1513010 Score = 266 bits (294), Expect = 3e-66 Identities = 623/919 (68%), Gaps = 37/919 (4%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACAT--T 15943 |||||||||| | | || |||||| || | |||||| | | | |||||| || | | Sbjct 1394813 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAAC--ACCTGAT 1394756 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| || |||||||||||||||||||||||||||||||| ||| || || Sbjct 1394755 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAG 1394696 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAA---TTCCAAC 16060 ||||| || ||| |||||||||||| | ||| || || || ||| || Sbjct 1394695 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCTAA- 1394637 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC-AGTTCATTCCTAT 16119 ||||| ||| || |||||||| || || || ||| || || | |||||||| || Sbjct 1394636 --TAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAAT 1394580 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 ||| | | ||| | | ||| | ||| | |||||| | ||| ||||| | | Sbjct 1394579 TAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAAC 1394520 Query 16180 TATATCTCTTACTACACTATT----TAACGGAGGGTTTAATAAGTGTTTAAACATTATAC 16235 ||||| | || || || || ||| | | | ||| || | |||| | Sbjct 1394519 TATATTTTGAACAAC-CTCTTCTGGTAATTTATTTTCCAGCAAGC---TATAAATTAAGC 1394464 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 || |||||| || |||||||| || ||||| || || || || |||||| | || Sbjct 1394463 AATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAAC 1394404 Query 16296 C-TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 | || ||| | | ||||||||| ||||||||| || ||| ||| ||| ||| Sbjct 1394403 CATGTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAAT 1394345 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG--TTC-TAtttttactt 16411 || ||||| || ||| || || | || ||| | | | ||| ||| || Sbjct 1394344 ATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATT---- 1394289 Query 16412 tctatccattttttagcccaatttgcttt-ttgtttAACACAGTTCATGTTCTCTATTGC 16470 ||||||||| ||||| |||||| || |||| | | | || || || || || Sbjct 1394288 --TATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGT-ATATTTTCAATAGC 1394232 Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATA 16530 || |||||||| | | ||||| ||| ||||||| |||| |||| ||||||||| Sbjct 1394231 ATGAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATA 1394172 Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGA 16590 |||| || || ||||| || | ||||| |||||| ||||||| | | ||||| Sbjct 1394171 GGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAAT 1394112 Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAG 16649 |||||||||||| ||||| || || ||||| ||||| ||||||||||| |||| Sbjct 1394111 TATTTGTACTTC-TCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAG 1394053 Query 16650 CTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttC-GTTATCTGAAAGTTTTAAC 16708 |||||||||| || || | ||||| ||||||| ||||| ||| | || |||| | Sbjct 1394052 CTGCAAAAAATGCTAGCACATGTTTTATAAAATGCTTTTCATTTACATTTAATTTTTCA- 1393994 Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768 |||| ||||| |||||||||| | ||||| |||||||||| || || |||| Sbjct 1393993 AAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCT 1393934 Query 16769 TTTTTATACATTTTCCATA 16787 |||||||| | ||||||| Sbjct 1393933 TTTTTATAAAAATTCCATA 1393915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462508178494600